Paenibacillus odorifer: PODO_29075
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Entry
PODO_29075 CDS
T03326
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03022
Basal transcription factors
pod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PODO_29075
09124 Replication and repair
03420 Nucleotide excision repair
PODO_29075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pod03021
]
PODO_29075
03036 Chromosome and associated proteins [BR:
pod03036
]
PODO_29075
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_29075
Enzymes [BR:
pod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PODO_29075
Transcription machinery [BR:
pod03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PODO_29075
Chromosome and associated proteins [BR:
pod03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PODO_29075
DNA repair and recombination proteins [BR:
pod03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PODO_29075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
Helicase_C
PPE-PPW
Motif
Other DBs
NCBI-ProteinID:
AIQ76947
LinkDB
All DBs
Position
complement(6470671..6472983)
Genome browser
AA seq
770 aa
AA seq
DB search
MSSTVALSVRTLVEYVFRSGSIEPGFHGTGAMVEGTRIHQKIQKQYKEGDRKEVYLKTEI
PYGNLLYVVDGRCDGLLVSEDGSFTVEEIKSTSGLLDLLDEGHEVHWAQALMYAYMIALE
QELSSIQVKLTYVHRATDEKKSLYRTLFFEELISFVNDTVARYAPYAEMMVHHEAKKEQS
LRELSFPFSSYRKGQRHFAGAVYKSVVEKVSLFAQAPTGIGKTMSTLFPVLKAMGEGQAK
GLFYLTAKTVTRFAAQEAISLLLTQGLQLHVITITAKEKACFREEGVCGKDSCPYTDGYY
DRINEALMDLLEHETLMSRDTIALYAHKHKVCPFEFSLDAAYACDAVICDYNYIYDPRIS
LKRLTEERKRETVLLVDEAHNLVDRGREMFSASLLKAPFLEIQRQYKEMNRSLSKAAKSV
NAFFISLRKICNEEGQGQWDSFPEELPALLEIFSLEAEQELIHPSSSIVSLNGEDEGENV
LLDTYFAVQGMLRTFKTYDERYITYAEVRRGDVYLKLFNLDPSHLLRQMSKSFRSQILFS
ATLSPLSYYRDMIGAVEEDYSLTVSSPFQKEQWEVTVLPVSTRYHDREASLVPLTKALSQ
MVSKKGNYLVFFPSYLYLQNVYQAFTENYPEIRTLMQDTGMSEQARESFLAAFSPDNDET
LLGFAVLGGIFSEGVDLPGDRLNGVMVVGVGLPQLGLERNLLRQYFNARGKNGFDYAYVY
PGMCKVLQAGGRLIRSETDTGIIVLADDRFLQSPYMHLLPEEWRDYLIRS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgagctctacagtagctttatcagttagaactctcgttgaatatgtttttcgcagcgga
agcattgagcctggctttcatggaacgggcgctatggtcgaaggcacaagaattcatcag
aaaatccaaaagcaatataaggaaggtgaccgcaaagaggtttatttgaaaacggaaatt
ccttatggaaacctgctttatgttgtagatgggcgttgtgatggattgcttgtctcggag
gatgggagctttacggtcgaagaaatcaagtcaacctccggactgctggatttactggac
gagggacatgaggttcactgggcacaggcgctgatgtacgcatatatgatagctctggag
caagagctttcttctattcaggttaagcttacctatgtccaccgggccactgatgagaaa
aaaagcttgtaccgaacgttgttttttgaagagctgatttcatttgtgaatgacacagta
gctagatatgctccgtacgccgagatgatggttcatcatgaggctaagaaggagcagagt
cttcgggagttgagctttccgttctcctcttatcgaaagggacaacgtcattttgcagga
gccgtatataagtccgtcgtggaaaaggtcagtctgttcgctcaagcacccacaggtatt
gggaaaacaatgtcgacgttgtttcctgtccttaaagcgatgggcgaaggacaagctaag
ggattgttctatttaacggcaaagacggttacccgttttgccgcgcaggaagccatctcg
ctgttgctaacgcagggacttcagctgcatgtcatcactattaccgctaaagagaaggcc
tgttttcgcgaagagggggtttgcggtaaggattcctgtccttatacggatggttattat
gaccggatcaacgaggcgttgatggatctgttagagcacgagacgctcatgagcagagac
accattgcactgtatgctcacaaacacaaagtgtgcccatttgagttctcattggatgcg
gcctatgcctgtgatgctgtgatctgcgattacaattatatatatgatcctcgcatcagt
ctgaaacggctaacagaggaaagaaagagagaaacggtacttctagtagatgaagcacac
aatctggtagaccggggacgggaaatgttctccgcctctttgctgaaagcccctttcctg
gagatccagcgccaatataaagaaatgaaccggagtttgagtaaagccgctaaatcggtg
aatgcttttttcatctcccttcgcaaaatttgcaatgaagaggggcaagggcagtgggac
tcgttcccggaggagctgccagctttgcttgagatattttctttggaggcggaacaggaa
cttattcaccccagctccagcattgtctctctgaatggagaagatgaaggggaaaatgtc
ctcttggatacatattttgcagttcagggaatgctccgcacctttaagacctatgatgaa
cgctacattacctatgctgaggttcgtagaggggatgtctatctcaagttattcaatttg
gatccctcgcatctgcttcggcagatgtccaagagctttcgcagtcagatcctgttctca
gctacactttctccattatcttactaccgggatatgattggtgcggtggaggaagattac
agtttaactgtttcttctccttttcagaaggagcagtgggaagtaaccgtcttacctgtc
tccacacgttatcatgaccgggaagcttccctagttccgttgactaaagcactaagccaa
atggtctccaagaagggcaattatctggtgttttttccttcgtacctctatttacaaaac
gtatatcaggcctttacggagaattaccctgaaatccggacattgatgcaggatacgggc
atgagtgagcaagctagagaaagttttttagctgcatttagtccagacaatgacgagacg
ttattgggatttgctgtacttggaggaattttttcagaaggtgtggatctgccaggggat
cgcctcaatggggttatggttgttggcgttggcctgccacagcttggtcttgaacgcaat
ctgctgcgtcaatattttaatgccagaggaaaaaatggctttgattatgcctatgtctat
ccgggaatgtgcaaggtactgcaagccggaggccggttgattcgcagcgagacggatacg
ggcattatcgtgttggctgatgaccgttttttgcagagtccatatatgcatttgctcccc
gaagaatggagagattatcttatccgctcgtaa
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integrated database retrieval system
