Candidatus Phytoplasma oryzae: PIE28_00410
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Entry
PIE28_00410 CDS
T08823
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
poe
Candidatus Phytoplasma oryzae
Pathway
poe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PIE28_00410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poe03019
]
PIE28_00410
03009 Ribosome biogenesis [BR:
poe03009
]
PIE28_00410
Enzymes [BR:
poe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PIE28_00410
Messenger RNA biogenesis [BR:
poe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PIE28_00410
Ribosome biogenesis [BR:
poe03009
]
Prokaryotic type
rRNA helicases
PIE28_00410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Ago_PAZ_arc
Motif
Other DBs
NCBI-ProteinID:
WCA22500
LinkDB
All DBs
Position
complement(78103..79536)
Genome browser
AA seq
477 aa
AA seq
DB search
MSILFKELNLLQQTKDALKALNFDYPTPIQNLVIPEMIKGNDIIAQSQTGTGKTFSFGIP
IIEKINPKIRKTQSLVLCPTRELSIQVFDEMKKLLKFYKEIEITVICGGESYNKQFRALE
NKPHIIIATPGRIIDLLEKKKVDLSEIKIFTIDEADEMLKMGFQESLETILKNIPEKRQT
VLFSATLPITIKKIAAKYQKNPQILKIKHDNIAVKSIKQFYFLIKEFNKNKLLVRLLDQK
NPDSVIIFANTKKEVDNIFNYLQDKNFLVNAIHGDLKQNQRKYVMDNFRRKNIKILVATD
VAARGLDISDIKMIINYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISSNKIGRLKKLEFY
LKEKINFLKIPTVEEIQKEKDVYFHEKINKLIEKENTFETKENILLIDDLINKFSERKII
NSFLNYFRPEKKNYEPINEINKNFNFNNRRENFSNIRNNKFQDKNKSFLRKRKYINR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtattttatttaaagaattaaatttattacaacaaacaaaagacgctttaaaagct
ttaaattttgattatcctacacctattcaaaatttagtaataccagaaatgattaaggga
aatgatataatagcacaatcacaaacaggtactggtaaaactttttcttttggtatacct
ataattgaaaaaataaaccctaaaattagaaaaactcagtctttagttttatgtcctaca
agagaattatctattcaagtttttgatgaaatgaaaaaattacttaaattttataaagaa
attgaaataacagttatttgtggtggagaatcttataataaacaatttagagctttagaa
aataaacctcacattattatagctactcccggaagaattatagatttattagagaagaaa
aaggtggatttgtctgaaattaaaatttttactatagatgaagctgatgaaatgttaaaa
atgggttttcaagaatctttagaaactatattaaaaaatattcctgaaaaaagacaaaca
gtattattttcagctactcttcctataacaataaaaaaaatagctgctaaatatcaaaaa
aatcctcaaattttaaaaattaaacatgataatattgctgttaaatctataaaacaattt
tattttttaataaaagaatttaataaaaataaacttttagttcgtcttttagatcaaaaa
aatccagattcagtaattatttttgctaatactaaaaaggaagtagataatatttttaat
tatttgcaagataaaaattttttagttaatgctattcatggtgatttaaaacaaaatcaa
agaaaatatgttatggataattttagaagaaaaaatataaaaatattagtagctacagat
gtagcagctagaggtttagatatttcagatattaaaatgattattaattatgatttacca
catgaagatgaagtttatgttcatagaataggaagaacaggaagagcaggcaaaaaagga
ttagcatatagttttataagtagtaataaaataggtagattaaaaaaactggaattttat
ttaaaagaaaaaatcaactttttaaaaataccgacagtagaagaaatacaaaaagaaaaa
gatgtttactttcatgaaaaaattaataaattaatagaaaaagaaaatacatttgaaaca
aaagaaaatattcttttgatcgatgatttaataaataaatttagtgaaagaaaaattatt
aatagttttttaaattattttagacctgaaaagaaaaattatgaaccaataaatgaaata
aataaaaattttaattttaataatagaagagaaaattttagcaatataagaaataataag
tttcaagataaaaataaaagttttttaagaaaaagaaaatatataaatagataa
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