Candidatus Phytoplasma oryzae: PIE28_01070
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Entry
PIE28_01070 CDS
T08823
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
poe
Candidatus Phytoplasma oryzae
Brite
KEGG Orthology (KO) [BR:
poe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poe03019
]
PIE28_01070
03009 Ribosome biogenesis [BR:
poe03009
]
PIE28_01070
Enzymes [BR:
poe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PIE28_01070
Messenger RNA biogenesis [BR:
poe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PIE28_01070
Ribosome biogenesis [BR:
poe03009
]
Prokaryotic type
rRNA helicases
PIE28_01070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
PhoH
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WCA22624
LinkDB
All DBs
Position
complement(238572..239705)
Genome browser
AA seq
377 aa
AA seq
DB search
MQEYIKTKIEKLNFKQTTPIQEEVFRNFNKKLNLVCIAPTGTGKTHAYLLPILSQINWEL
NIIQAIILAPTNELVLQIFEMIIQIENRKDKIKIFFGGMNRTKTYLKLKKKQPSIIITTL
SKLFEYAHILKKINIYKSSFLVLDEADMFFEKKSLSLIKILLSKWKPKILLSSATLDKKM
EPFINKNFGKSLFINVNHKHKSNLNFHIFKSDKNNRLKDLINVIEKINPFLAFIFVSHKK
DQSNVYDFLKKKKLNILNFSSNLSVKERKRKIIEIKKNRYQYIITSDLASRGLDIKNISV
IIHYDLPIKNLDFFKHRNGRAGRTGEKSDIILFYNDEEKKYLIKIKKKNNINVSSIIPKI
IKNKKNLIKKKYKKKFI
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatatataaaaacaaaaatagaaaaattaaattttaaacaaacaacacctata
caagaagaagtattccgaaattttaataaaaaattaaatttagtatgtattgcaccaaca
ggaactggaaaaacacatgcctatttattacctattttaagtcaaataaattgggaatta
aatattatacaagctataatattagcacccacaaacgaattagttttgcaaatttttgaa
atgattattcaaatagaaaatagaaaagacaaaataaaaattttttttggaggtatgaac
agaactaaaacatatttaaaacttaaaaaaaaacaaccttctataattataacaacctta
agcaagttatttgaatatgctcatattttaaaaaaaattaacatatataaatcttcgttt
ttagtcttagatgaagcagatatgttttttgaaaaaaaatctttatctttaataaaaatt
ttattatctaaatggaaacctaaaattttactttcatcagctactcttgataaaaaaatg
gaaccttttattaataaaaatttcggaaaatctctttttataaatgttaatcataaacat
aaatcaaatttaaattttcatatttttaaaagtgataaaaataatcgtttaaaagattta
ataaatgtaatagaaaaaataaatccttttttagcttttatttttgtttcacataaaaaa
gatcaatctaatgtttacgattttttaaaaaaaaaaaaattaaatattttgaatttttct
tctaatttatctgttaaagaaagaaaaagaaaaataatagaaattaaaaaaaatagatat
caatatattataactagcgatttagcttctagaggattagatatcaaaaatatttctgta
attatacattatgacttaccaattaaaaacttagatttttttaaacatagaaacggtaga
gcaggaagaacaggagaaaaatctgatattattttattttataatgatgaagaaaaaaaa
tatttaataaaaataaaaaaaaaaaataatattaatgtttcatctataattcctaaaata
ataaaaaataaaaaaaatttaataaaaaaaaaatataaaaaaaaatttatttaa
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