Pontibacillus sp. HMF3514: GS400_00755
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Entry
GS400_00755 CDS
T06374
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pof
Pontibacillus sp. HMF3514
Pathway
pof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GS400_00755 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pof03021
]
GS400_00755 (rpoC)
03400 DNA repair and recombination proteins [BR:
pof03400
]
GS400_00755 (rpoC)
Enzymes [BR:
pof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GS400_00755 (rpoC)
Transcription machinery [BR:
pof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GS400_00755 (rpoC)
DNA repair and recombination proteins [BR:
pof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GS400_00755 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QHE50683
LinkDB
All DBs
Position
142794..146414
Genome browser
AA seq
1206 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYVVTDTGDTALEKKQLLSEKEYRTYREKYGNTFHAAMGAEAIRKLLQ
GIDLEGEVETLKEELKTAQGQRRTRAIKRLEVLESFRGSGNDPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPTIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQVGLPKE
MALELFKPFVMRELVDRGLAHNIKSAKRKIERIHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDAIGEGKVFKDTEEALIAYQNGYVHLHTRVAVY
AGSLQNQTFSQEQNEQLLLTTVGKLIFNEILPESFPYINEPTQENLEKATPEMYFIPRGT
DVKEEIKKRDIVAPFKKGILGDIIAEVFKRFKISETSKMLDRMKDLGFAYSTKAGITVGV
SDIVVLPEKQKILDEAQEKVDKVMKQFRRGLITDDERYDRVIAIWSAAKDDIQERLMKSL
DPTNPIYMMSDSGARGNASNFTQLAGMRGLMANPSGKIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEVESLTEGTEMIEPLI
DRLIGRIAFKTVRHPESGEVMAKRNELITEDKAKQIVDAGVEKVVIRSVFTCSTRHGVCK
KCYGRNLATGSEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIYGTVEDVAEVKDKLEITVQGEVEKRSYTAPYGARMKVSIGDSVIAG
DALTEGSIDPKDLLKIQGMEGVEAYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVH
DAGDTDVLPGSLLEIHQFKEANQTALVEGEQPAVGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRSIEPASDELTEDMKSAPEQP
EEITQS
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgttaataattttgaatatatgaagataggtttagcttctccagataagatc
cgctcatggtcttatggtgaggttaaaaaaccagaaacgattaattatcgtacgttaaag
cctgaaaaagatggattgttctgtgaacgtatctttggacctacaaaggattgggaatgt
cattgtgggaagtacaaacgagttcgttataaagggatcgtttgtgaccgctgtggcgtt
gaagtaacaaaggcgaaagttcgccgtgagcgtatggggcacttagagttagctgcccct
gtctctcacatctggtacttcaaaggtattccaagtcgtatgggtcttgttctagatatg
tctccacgtgctctagaagaagttatttactttgctgcttacgtggtaacagatacaggc
gatacagcacttgagaaaaagcagctgctttctgaaaaagaataccgtacgtatcgagaa
aaatatggtaacacattccacgctgcaatgggtgctgaagcaattcgtaaacttcttcaa
ggtattgatcttgaaggggaagtagaaacgttaaaagaagagctgaaaacagcacaaggt
caacgtcgtactcgtgctattaagcgcttagaagtattagagtcgttccgtggttcagga
aatgacccatcttggatgatccttgatgtgcttcctgtaatcccacctgaattacgtcca
atggttcagttagatggtgggcgttttgcgacatctgacctaaatgatttatatcgtcgt
gtgattaatcgaaataaccgtttgaaacgcttgttagacctaggagctcctacgattatc
gttcaaaacgaaaaacgtatgcttcaagaagcagttgacgcactaatagacaatggtcgt
cgtggtcgtcctgtaacggggccaggtaaccgtccattgaaatctctttctcatatgctg
aaaggtaaacaaggacgtttccgtcagaaccttcttggtaaacgtgttgactactccggt
cgttccgtaatcgtagttggaccaagcttgaagatgtatcaagtaggtttaccaaaagaa
atggctttagaattatttaaaccatttgtaatgagagaacttgtagaccgaggtcttgct
cataatattaaatcagctaaacgcaagatcgagcgcattcacccagaagtatgggatgtt
ctagaagatgttattaaagaacacccagtgctattaaaccgtgcgcctaccttgcaccgt
ttaggaatccaggcgtttgaaccaacattggttgaagggcgcgcaattcgtcttcaccca
cttgtatgtacagcatataacgcggactttgacggtgaccaaatggccgtacacgttccg
ttatcagctgaagcacaagcagaagctcgtattcttatgcttgctgcccagaacatcctg
aatcctaaagatggtaaaccagttgttacaccttcacaggatatggtattaggtaactat
tacctaactcttgagcgtgaagatgcaattggtgaaggtaaagtctttaaggatactgaa
gaagctttaattgcttatcaaaatggttatgttcacctacacactcgtgtagctgtatat
gctggatcgttacaaaaccagacatttagtcaagaacaaaatgaacaacttctacttaca
actgtaggtaagttgattttcaatgaaatacttcctgaatcgttcccttatatcaatgaa
ccgacacaggagaacttagaaaaagctactccagaaatgtacttcattccaagagggaca
gacgttaaggaagaaattaaaaagcgtgatattgtagcaccattcaagaaaggtatccta
ggagatatcattgcagaagtgttcaaacgctttaagatcagtgaaacatctaagatgctt
gaccgcatgaaggatctaggttttgcttactccacgaaggctggtattacagtaggtgta
tctgacatcgttgtattacctgaaaaacaaaagattcttgatgaagcacaagaaaaagtc
gacaaagttatgaagcaattccgtcgtggtttaatcacggatgacgaacgttatgaccgt
gtaattgcgatttggtctgcggctaaagatgacattcaagagcgtttgatgaaatcctta
gacccaaccaacccaatttacatgatgagtgactctggtgcccgtggtaacgcgtcaaac
ttcactcagcttgcaggtatgcgtggtctgatggcgaacccatctggtaagatcatcgaa
ctaccgatcaaatctagcttccgtgaaggtcttacagtacttgagtactttatttccaca
cacggtgctcgtaaaggtctagccgatacagccctgaaaacagctgactcaggttacctg
acacgtcgtcttgttgacgttgctcaagatgttattgtccgtgaagatgattgtggaaca
gaccgcggtctagaagtagagtctctaactgaagggacagaaatgattgagccattaatc
gatcgtctaattggacgtattgcgttcaagacagttcgccacccagaatcaggtgaagta
atggcaaaacgtaatgaattaataactgaagataaagcaaaacaaattgttgatgctggt
gtcgagaaagttgttatccgttccgtattcacatgttctacacgtcatggtgtatgtaag
aagtgttacggccgtaacttagcaactggttctgaagtagaagtaggagaagctgtagga
attattgcagcacaatcaatcggtgagccaggtacacagcttacgatgcgtacattccac
acaggtggtgtagcaggagatgacattacacaaggtcttccacgtatccaagagttgttt
gaagctcgtaatccgaaaggtcaggctgtaatcagtgaaatctacggtactgtagaagat
gttgctgaagttaaggataagcttgaaatcactgttcaaggtgaagtagagaaacgtagc
tacactgcaccttatggagctcgtatgaaagtttcaattggcgactctgtcattgcagga
gatgctctaacagaaggttccattgatccaaaagacctccttaagattcaaggtatggaa
ggtgtagaagcttaccttctaaaagaagtacagaaggtatatcgtatgcagggtgttgaa
atcggtgataaacacgtagaggttatggttcgccagatgctgcgtaaaatccgagtgcac
gatgcaggtgatactgatgtgctaccaggttccttacttgaaattcaccaatttaaagaa
gcgaaccaaacagcattagtagaaggagagcaaccagctgttggtcgtcctgtcctatta
ggtattacgaaagcatcccttgaaacagattccttcttatctgcagcgtccttccaggag
actactcgtgtcctaacagatgctgcgattaaaggtaagcgcgatgagcttcttggcttg
aaagagaacgttattattggtaagcttgttccggctggtacaggaatgccgagataccgt
agtatcgagcctgcttctgacgaattaactgaagatatgaaatctgcaccagagcaacca
gaagaaatcacacagtcttaa
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