Pontibacillus sp. HMF3514: GS400_09560
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Entry
GS400_09560 CDS
T06374
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pof
Pontibacillus sp. HMF3514
Pathway
pof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS400_09560 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pof03019
]
GS400_09560 (rny)
Messenger RNA biogenesis [BR:
pof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GS400_09560 (rny)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
KH_2
DUF2844
Motif
Other DBs
NCBI-ProteinID:
QHE52264
UniProt:
A0A6P1HLZ7
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Position
1851095..1852657
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AA seq
520 aa
AA seq
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MGTMTLIISILLTLIVGLFVGYLVRKSIAEAKISSAEELAKQIVDEGHRNADAAKKEALL
EAKEENHKFRQEAEQEVKERRNELQKQESRLMQKEENLDRKSETLDKRELMLEKKEESLT
EKQQQIEVTESKVEEMREQQQSELERISGYTTDQAKQIILERVEQEVSHESALMVKEAEN
RAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARIALEKLVQDGRIHPARIEEMVEKSRREVDEYIR
EVGEQTTFEVGVHGLHPDLVKILGRLKYRTSYGQNVLKHSTEVAYLSGLLAAELGEDETL
ARRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKENDTVINAIASHHGDEEATSIISVLV
AAADALSAARPGARSETLENYIKRLEKLEEISESYDGVEKSFAIQAGREVRIMVKPEDID
DLKSVQLARDVRNRIENELDYPGHIKVTVVRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggtacaatgacactaatcatctccattttgcttacccttatagtcggtttgtttgtt
ggttatttggttcggaaatccattgccgaagcgaagatttccagtgcagaagaattggcg
aagcaaattgtggacgaagggcatcgtaacgctgatgcagcgaaaaaggaagctctttta
gaagcaaaagaagagaaccataaatttcgtcaggaagctgaacaggaagttaaagagcgt
cgcaatgaacttcagaagcaagaaagccgtttaatgcaaaaagaagagaatctggatcgt
aaaagtgaaacgctggataagcgcgagctcatgttagagaagaaagaagagtcactaaca
gaaaaacaacaacaaattgaagtaacggaaagcaaagtggaagagatgagagagcagcaa
cagtctgagcttgaacgcatttccggttacacaacagatcaagctaaacagattatttta
gaacgtgtagaacaagaagtttcccatgaatcagcgcttatggtgaaagaagcggaaaat
cgtgcgaaagaggaagctgataagaaagcgaaaaacattctatcacttgccttacaacgt
tgtgctgccgatcacgttgcagagacaaccgtttccgttgtcaacttaccaaatgacgaa
atgaaaggtcgtattattggacgtgagggacgtaatatccgtacgttagaaacattaacg
gggattgaccttattattgatgatacaccagaagcagttattttatctgggtttgaccca
attcgacgagagactgctcgcattgctttagagaaattagtacaggatggacgtatccac
cctgcacgcattgaagaaatggtagagaaatctcgtcgtgaagtagatgaatatattcgt
gaggttggtgaacaaacaacatttgaagttggtgttcacggtctacatcctgatcttgtg
aagatcttaggacgtctaaaatatcgtacaagctatggtcaaaatgtgttgaaacactcc
acggaagtagcatacctatcaggcttgttagctgctgaactaggggaagacgaaacactt
gctcgacgcgctggattactacatgacattggtaaagccattgatcatgaagtagaaggt
agtcacgttgaaattggtgttgaattggctacgaagtataaagaaaatgacacagtcatc
aatgcaattgcatctcaccatggagatgaagaagctacatccattatatctgtactagta
gctgcagcggacgctctttctgccgctcgccctggtgcacgtagtgaaacacttgaaaac
tacattaagcgtcttgagaagttagaagaaatctctgaatcctatgacggagtagagaaa
tcctttgctattcaagctggacgtgaagtgcgcatcatggttaagcctgaagatatcgat
gatctgaaatctgttcagttagctcgagacgttcgaaaccggattgagaatgaactggat
tacccaggtcacattaaagtaaccgttgtacgcgaaacaagagcagttgaatatgcgaaa
taa
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