Pyrobaculum oguniense: Pogu_0073
Help
Entry
Pogu_0073 CDS
T01735
Name
(GenBank) putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
pog
Pyrobaculum oguniense
Pathway
pog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pogu_0073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pog03019
]
Pogu_0073
Messenger RNA biogenesis [BR:
pog03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Pogu_0073
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Pogu_0073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_3
Zn_ribbon_NUD
DZR
Auto_anti-p27
Zn_ribbon_6
DUF7130
zf-FPG_IleRS
zf-ChsH2
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
AFA38100
UniProt:
H6Q6E2
LinkDB
All DBs
Position
65874..66410
Genome browser
AA seq
178 aa
AA seq
DB search
MKKAVVTPGEVVAYAEEFETKGAVYNTGYEYRAATLGIAAYDPKTHTAVVKPTRKPPIPQ
PGTVVYCQVTSKGRRAYQLRCFAVEEGRSLADMKYTITGVLPHFFSDGELGIGDYIRAKV
VSTYGPPIIVSIRGPTYGAVLSRCPKCGTVLKRRGMTLYCPNCSTEVKRKLAVGYYTG
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaagccgtagtaacgcccggcgaggtggtggcatacgccgaggagttcgaaaca
aagggcgcagtctacaacaccggctacgagtaccgagccgcgacgctcggaatcgcggca
tacgacccaaaaacacacacagccgtggtaaagcccaccagaaagcccccaataccccaa
ccaggcaccgtggtctactgccaagtaaccagcaagggaaggagagcataccagctcaga
tgcttcgcagtagaggaggggagatcgctggccgatatgaaatacaccatcacaggcgtg
ctcccgcacttcttctcagacggcgagctcggcataggcgactacatcagggcgaaggta
gtatccacctacggcccccccataatcgtgtcaatacggggccccacatacggcgcagtc
ctctccagatgccccaaatgcggcacagtgctgaagaggaggggcatgaccctatactgc
cccaactgctccaccgaggtaaagcggaagctggcagtgggctactacaccggataa
DBGET
integrated database retrieval system
