Polynucleobacter paneuropaeus: DPM16_02190
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Entry
DPM16_02190 CDS
T05507
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPM16_02190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poh03019
]
DPM16_02190
Enzymes [BR:
poh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DPM16_02190
Messenger RNA biogenesis [BR:
poh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPM16_02190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWW45230
LinkDB
All DBs
Position
408677..410149
Genome browser
AA seq
490 aa
AA seq
DB search
MPTETSAEPTPQATITFADFGLDPLIQKAVSEQGYTSPTPIQAQAIPHVLLGQDLMGAAQ
TGTGKTAAFVLPIIQRILRHASSSASPARHPIRALVLTPTRELAVQVAENAANYSRHTDL
RSAVVYGGVDMKEQVATLRGGIEILIATPGRLLDHIGSKVANLSQVELLVLDEADRMLDM
GFLPDLQRIINLIPAQRQTLLFSATFSPEIKKLAQSYLRNPVTVEVARQNAAADTVRQVI
HIVRSGDKEKAIVKILASRTEQGLSRQCIIFTNSRMGCARLARALERDGIKAGAIHGDKS
QGERTLTLDAFKSGAIEALVATDVAARGLDIPAMPCVINHELPFNAEDFIHRIGRTGRAG
STGDAIALVDDSEKRLLDDIEKLMKRKLEIMPLPNIDIPGGNESDDRTKHRSSRETTQRS
YSTPTPSRTSAPPSDPFFFTPYESPKLANKAEKSDAAQAEGASPQPEVKKVGIVPAKPPV
GALLGGFKKK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atccctactgaaacttctgctgaacccactccccaagcaacgattacctttgctgatttt
ggcttagatccgctgatccaaaaagcggtatctgagcagggctacaccagccctacaccc
attcaagcgcaagccataccccatgttttattggggcaagacttgatgggcgctgcccaa
acaggcactggcaaaactgccgcatttgtattgcctattattcaacgcattttgcgtcac
gcaagtagtagcgcctcacctgccaggcatccaatccgagctttagtgcttacaccgacc
cgcgagttagctgttcaggtggcagagaatgcagcaaactattctcgtcatactgattta
cgttcggctgtggtctacggtggcgtggatatgaaagagcaagtagccaccttgcgaggc
ggtatcgagattttgattgcgacgcctggccgtctcctagatcacattggatctaaggta
gccaacctctctcaagtagagctcttagtcttagatgaggccgaccgcatgcttgatatg
ggcttcttgcccgatttgcaacggatcatcaatttaattcctgcacaacgtcagacttta
ttgttctcagcaacgttctcgccagagattaaaaaactggcacagagctatttgcgtaat
cctgtgacggtggaagtggctcggcaaaatgctgctgctgatactgtgcgccaagtaatt
cacattgtgcgatcgggggataaagaaaaggcgattgtgaagattttggcttcacgaacg
gaacaaggtttgtcccgccagtgcatcatctttaccaatagccgcatgggttgcgccaga
ctagcgcgtgctctagagcgagacgggattaaagccggcgcgattcatggcgataagagt
caaggcgagcgcactttaacgcttgacgctttcaaatctggtgcaatcgaagcgctcgtt
gcaactgatgtggcagcccggggtttagatattccagcaatgccatgtgtgattaatcat
gagttaccgtttaatgcggaggactttattcaccggattggccgcactgggcgcgcagga
agtactggtgatgcgattgctttggtagacgatagtgaaaaacgtctgctcgacgatatc
gagaagttgatgaagcgtaagttagaaatcatgcctttacccaacatcgatataccgggc
ggtaatgaatctgacgatcgcactaaacatcgatcatctcgagagactactcagagatcg
tattcaacaccaacacctagccgaacatcagcacccccttccgatcctttcttcttcacc
ccctatgaatctccaaagttagccaataaggcagaaaagtcggatgccgcacaggctgaa
ggtgcaagccctcagcccgaagttaagaaggtgggtattgttcctgcaaagcctccagtt
ggcgctttgcttggtggcttcaaaaagaaataa
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