Polynucleobacter paneuropaeus: DPM16_02200
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Entry
DPM16_02200 CDS
T05507
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03030
DNA replication
poh03430
Mismatch repair
poh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPM16_02200
03430 Mismatch repair
DPM16_02200
03440 Homologous recombination
DPM16_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poh03032
]
DPM16_02200
03400 DNA repair and recombination proteins [BR:
poh03400
]
DPM16_02200
Enzymes [BR:
poh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DPM16_02200
DNA replication proteins [BR:
poh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DPM16_02200
DNA repair and recombination proteins [BR:
poh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DPM16_02200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AWW44143
LinkDB
All DBs
Position
411114..414722
Genome browser
AA seq
1202 aa
AA seq
DB search
MALPRFVHLRLHSEFSITDGIVRIDDAIAAAAKDEMGALAITDLGNLFGLVRFYSGARAA
GLKPIAGADVWISNPQDPDQPHRLLLLVQNQSGYLNLCQLLSRASLDNQSRGRAEVNPQW
FTEPAAKEEDRKAKKTLAHGLIALSGARTGDVGVALLGGQSDQAKVLAQRWSKVFPDSYF
IEVQRGGHPQDEQHLQFACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIAEGELLGN
PRRQKKFNEEQYFLSQVEMEQRFADLPVALANSVEIAKRCNLSLTLGQPRLPNFPTPPGI
TLDDYLLQQSEIGLKRHMERNFPDPAERTKEEGRYHDRLVFEVKTISQMGFPGYFLIVAD
FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF
CQQGRDRVIQYVKDKYGKDAVSQIVTFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNK
PGQYMTIDMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGKLTD
FCPLYTQETKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTILAAAERWIKTLHADRK
DWSIGDMALDDPAAFEVLKKANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRPGP
MDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIGGYSLGGADLLR
RAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNKSHAAAYALLAY
QTAWLKAHYPAEFMAANLSLAMDDTDKIKILYDDCLANQIRVFSPDINTGVYDFTPLRSP
DATPDAPLSHIRYGLGAVRGTGEAAIEAIVKAREAGGSFKDIFDFCMRVDRRQVNRRAIE
ALIRAGAFDTLYKDQLQTGGNLFDIRSTLLASLARAIEAAEQAEASVNQVSLFEVAGEAD
RHLPELVREPVWSEKKRLSEEKTALGLCLTGHMFDAYREETSHFIRQPLAKVTEGKDQLI
AGIITSARMLTGQRGRMMIATIDDGSAAIEVTLYSEVYEPNRSWLKEDELLVAKVNVTPD
KFSGGMRVVAEAVMDITGARMRFARNVHVCIDSAIDVKMLRSQIGPYLMANRTREPKFGA
PPTASNDGVKGLILTAAVTTAGGACLIQFPEDLRVYPDDACLHSLHQVLASKQANPVQVQ
YH
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggctttacctcgttttgttcatcttcgtctccactccgagttttcaattacggacgga
atcgtgcgaattgatgatgcgattgctgcagccgctaaagatgagatgggtgccttggcc
atcacagatctgggtaatctatttggcctagtgcgtttttattctggagcccgtgccgca
ggacttaaaccgattgctggtgctgatgtctggattagcaatcctcaggatcccgatcaa
ccccatcgtttattgctcttggtgcaaaaccaatcgggctatctgaatttatgtcagttg
cttagccgcgcttctttagataatcaatcgcgcggtagagccgaagtgaacccccaatgg
tttacagaacccgccgccaaagaagaagaccgtaaagcgaagaaaaccctagcccatggt
ctgattgccttgtcgggggcacgcactggcgatgtgggtgtagcgctattaggcggtcaa
tccgatcaagctaaagtcctggcacagcgttggagcaaggtattccccgatagttacttc
attgaagtgcagcgcggcggtcatccgcaagatgagcaacaccttcaattcgcttgtcat
ctggccagtgaattagacctgcccgtagtagcgacccatcctgtgcaattcatgcaaaga
agtgatttcacggcgcatgaggcacgagtatgtatcgctgagggtgagttattaggtaat
ccccgtcgtcagaagaaattcaatgaagagcaatatttcctgagtcaagtggagatggaa
cagcgctttgcagatctacctgttgccttagcgaactcagtagaaattgctaagcgttgc
aatctctcgctcactttaggccaaccgcgtttaccaaatttcccgacgccacctggtatt
acgctagacgattatttattgcagcaatcggagattggtttgaagcgccacatggagcgt
aactttcctgatccagcagagcgcacaaaagaagagggtcgttatcacgatcgcctggtc
tttgaagtgaagacaatctcgcaaatgggtttcccaggatacttcttgattgttgctgac
ttcattaactgggctaagaacaacggcgttcccgtaggtcctgggcgcggatcgggagca
ggctctttggttgcttattcactaggcattaccgaccttgaccccttgcgttacaacctc
ctttttgagcgctttctgaatcctgagcgtgtctcgatgcctgactttgatatcgatttt
tgtcagcagggtcgcgaccgagtgattcagtacgttaaagataagtacggcaaagatgcg
gtcagccaaattgtgaccttcggcactatggctgcgcgtgcagcgattcgagatgtaggt
cgagtattagagcagggctataactttgtcgatggtatcgctaagcttgtgccgaataag
ccaggtcaatacatgacgattgatatggccaagaaggaagaaaagcaattagccgagcgt
gagaagaatgaagatgaagtgcgtcaactcttatcgctcgctcagcaattagagggtatg
actcgtaacgtgggtatgcatgctggtggcgtattgattgcccccggtaagctaacagat
ttttgtccactctacacccaagagacaaaagatcaagatagtagttctgtgatcagtcag
tttgataaagatgatgtagaggcgattggtctcgttaagtttgacttcttaggtctgacg
acgctgaccatcttggcagcagccgagcgctggattaaaaccctccatgcggatcgcaaa
gactggagcattggcgatatggcgctcgatgatcctgctgcgtttgaggtcctcaaaaaa
gccaataccgttgccgtcttccagctagaaagtcgcggcatgcaaggtatgcttcgggaa
gccaagcccgatcgttttgaggacatcattgccttggtcgccttatatcgtccgggcccg
atggatcttattcctgactttattgagcgtaagcacgggcgtcaaaaagtagagtatccc
gatccccgtatcgaacccgttctacgtgaaacctacggcatcatggtctatcaagaacag
gtgatgcagatggcgcagatgatcggtggctactcattgggtggcgcggatttattacga
cgtgcgatgggcaagaaaaaacctgaagagatggcacagcatcgcaagatctttagtgat
ggggcaaaagctggcggtatctctgaaggcaaagccaatgaaatctatgacctgatggaa
cgctttgcgggttatggttttaataaatcgcatgcagctgcttatgccttattggcttat
caaaccgcctggttaaaagcccattaccccgcagaatttatggcagccaacttatcgctc
gccatggacgataccgataagatcaagatcttgtatgacgactgcttggctaatcaaata
cgggtgttctctcccgatatcaacactggcgtgtatgacttcactcccttacggagccca
gatgctacgccggatgcgccactcagtcacattcgttatggtctgggtgcagtacgcggt
acgggtgaggcggcaattgaggcgattgttaaagcgcgtgaagcgggcggatcctttaag
gatatttttgatttctgtatgcgcgtcgatcgccgtcaagtcaatcgtcgtgcgattgaa
gctttgatacgggctggagcgtttgataccttgtataaagatcaactccagactggcggc
aatctatttgatattcgttctaccttattagcttccctggcacgtgccattgaagctgca
gaacaagccgaagcctcagtgaaccaggtgagcttatttgaagttgctggtgaagccgat
cgtcacctgccagagttagtgcgcgaacctgtgtggtctgagaaaaaacgcctctctgaa
gagaagactgcgctcggcctttgtttaacaggacatatgtttgatgcttatcgtgaagag
actagccacttcatccgccagcctttagcaaaagtgactgaaggtaaagatcaattaatt
gcaggcattatcacctcggcgcggatgctgacggggcagcgtggacgcatgatgattgca
acgattgatgatggtagtgctgcaattgaagtcactctctatagcgaagtctatgaaccc
aatcgctcttggcttaaagaagatgagttacttgttgccaaggtgaacgttacccccgat
aagttctcaggcggtatgcgagttgttgcggaagcagtcatggatatcacgggtgccaga
atgcgctttgcacgcaatgtgcacgtttgtattgattcagcgatcgatgtgaagatgtta
cgtagccaaattggaccctacttaatggctaatcgcactcgagaacctaaatttggcgcc
cctcccacagctagtaatgatggagtcaagggtttaattctgacggcagcggtgactacg
gctggtggtgcttgcttaattcagttcccagaggacttgcgggtctatcctgatgacgct
tgcttacacagcctgcatcaagttttagcttccaagcaagctaatcctgtacaagttcag
tatcactaa
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