Polynucleobacter paneuropaeus: DPM16_02860
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Entry
DPM16_02860 CDS
T05507
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
poh
Polynucleobacter paneuropaeus
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poh03400
]
DPM16_02860
DNA repair and recombination proteins [BR:
poh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DPM16_02860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
DUF7125
DnaB_C
ChlI
Lon_C
AAA_16
AAA_22
Rad51
nSTAND_NTPase5
nSTAND3
AAA_24
RecA_N
AAA
AAA_30
SLFN-g3_helicase
NTPase_1
GvpD_bR2
zf-RING_10
TackOD1
DAP3
ATPase_2
AAA_19
NPHP3_N
AAA_14
ABC_tran
NACHT
AAA_5
DUF7129
PAXNEB
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AWW44261
LinkDB
All DBs
Position
546108..547472
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AA seq
454 aa
AA seq
DB search
MAKAKTIYVCQSCGGTSAKWQGQCPSCQAWNTMEEGLPESSTPSRFQGLAQSLPRQKLAA
ITAEDLPRFSTGVEEFDRVLGGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSAGMHVLY
SSGEESAAQIALRAKRIALEAPALEVLAEIQLEKLLSIMETVKPQVLVVDSIQTLYSEAF
SSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVSNPSAIFLSQHEQMVPGACVLVTQEGT
RPLLVEIQALVDTAHIPNPRRLAVGLEQHRLAMLLAVLHRHAGVACFDQDVFLNAVGGVK
INEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIRPCPRGQERLKEAAKLGFKLA
IIPKANMPKNKIPGLKVIPVERIDQAIAAANELS
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ttggctaaagctaaaacgatttatgtctgtcaatcatgtggcggaacttctgccaaatgg
caagggcagtgtccttcctgtcaggcttggaacacaatggaggaaggacttcctgagtcg
agtacaccatcccgctttcagggtttggctcaatctttgccaagacaaaaacttgcagca
attactgcggaagatttacctcgttttagtactggggtagaagagttcgatcgcgtttta
ggtggtggcttagttccgggcggtgttgtacttttgggtggcgatcccggcattggtaaa
tccaccttgttacttcaggctttggctgagatgagttcagctggtatgcatgttctctac
agtagtggtgaagagtcagctgcgcaaattgcattgcgggctaaacggattgccttagaa
gctcctgcgcttgaagtattggctgagattcagctagagaagctgttgtccatcatggaa
accgtgaagcctcaagtgctcgtggtggactctattcaaactttgtattcagaagccttc
agttctgcgccaggctcagtagcccaggtgcgtgagtgtgccgcacaactcacgagggct
gccaagtccagtggcatctgtgtgttgatggttgggcatgtcaccaaagacggtcatctt
gctggtcctcgtgtcttagaacatattgtggatacggttttgtattttgagggcgatacg
cattcttcatttagattggtgcgttcgattaaaaaccgctttggcgctgtcaatgagctc
ggtgtttttgcgatgactgaaaaaggtctgcgtggtgtatcgaatccatcagcgattttc
ttatcgcagcacgaacagatggtgccaggagcttgtgttctggtaacgcaagaaggtacc
agaccactcttagtggagatccaggctttagttgataccgcccatatccccaacccaaga
agattggcggtagggttggagcagcatcgcttggcaatgctgctggcggtcttacatcgt
catgctggggtcgcttgctttgatcaagacgtattcttaaacgcagtaggcggcgtcaaa
atcaatgagcctgctgctgacttagctgttctactcgctattcaatcctcgattcgaaat
cgtgcactacccaaagaattgatcgtcttcggtgaagtcggtttagctggggagattcgc
ccatgcccgagaggtcaggaacgattgaaggaagctgccaaattgggctttaagcttgca
atcattccgaaggccaatatgccaaagaataaaattccgggacttaaagtaatccctgtt
gaaagaattgaccaggcgattgctgcagcgaatgagctgagctag
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