Polynucleobacter paneuropaeus: DPM16_03335
Help
Entry
DPM16_03335 CDS
T05507
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPM16_03335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poh03021
]
DPM16_03335
03019 Messenger RNA biogenesis [BR:
poh03019
]
DPM16_03335
Transcription machinery [BR:
poh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DPM16_03335
Messenger RNA biogenesis [BR:
poh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DPM16_03335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_25
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AWW44351
UniProt:
A0A9Q2WL43
LinkDB
All DBs
Position
complement(636136..637398)
Genome browser
AA seq
420 aa
AA seq
DB search
MQLTELKVLHVSALLEMAASLEIENTQRMRKQELMFAILKKRAKTGETVFGDGTLEVLPD
GFGFLRSPEASYMASPDDIYISPAQIRRFNLHTGDSVEGEVRTPKDGERYFALVKVDKIN
GLAPEALKNRIMFENLTPLHPNRVISLERDIKAEENLTGRIIDMISPIGYGQRGLLVASP
KSGKTVMMQHIAHAISANNPDAILIVLLVDERPEEVTEMQRSVRGEVVASTFDEPAVRHV
QVAEMVIEKAKRLVEMGKDVIILLDSITRLARAYNTVVPSSGKVLSGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDLIYEEFKGTGNMEVHLERRLAERRVYPAINL
NKSGTRREELLVKAENLQKIWVLRKLLADMDDIEAMNFIVDKLKSTKNNGEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaactgaacttaaagtcctccacgtatccgccctgctggaaatggcagctagc
ctggagattgaaaacacccaacggatgcgtaaacaagaattgatgtttgccattctcaag
aaacgcgcgaagactggtgaaactgtcttcggtgatggcaccttagaggtattaccggat
ggctttggtttcttgcgctctccagaagcctcctatatggcttctccagacgatatctat
atctcccctgcacagatccgccgctttaacttgcacactggtgatagcgttgaaggtgaa
gtacgtacccctaaagatggtgagcgttactttgctttagtgaaggtcgataagatcaat
ggcttagcgccagaggctctgaagaatcgcatcatgtttgagaacctcacaccgctccac
cctaaccgtgtgatctccttagagcgcgatatcaaggcagaagaaaacctgactggccgc
atcatcgatatgatttcgcccatcggttatggacagcgcggcctcttggttgcctcaccc
aagtctggtaagacggtgatgatgcagcacattgcgcatgcaatctctgctaataatcct
gatgcgatcttgatcgtattgctcgttgatgagcgccctgaagaagtgactgaaatgcag
cgctccgtgcgcggtgaagtcgtagcctctacttttgatgagccagcagtgcgtcacgtt
caagtcgccgagatggtgattgaaaaagccaagcgcttagttgagatgggcaaagatgtg
atcatcctgcttgattcaattacccgtttagcgcgcgcttacaacaccgtcgtaccttcc
tcaggtaaggtcctctccggcggtgtggatgccaatgcattgcaacgtccaaaacgtttc
tttggtgccgctcgtaatattgaagaaggtggctcactcaccatcatcgcaactgccctg
attgaaactggcagccgtatggatgacttgatctacgaagagttcaaaggtactggcaat
atggaagtccaccttgagcgtcgtttggctgagcgccgagtttacccagcgatcaatctc
aataagtctggtacccgtcgtgaagagctcttggtgaaggctgagaaccttcagaagatc
tgggtattgcgtaaattgttggccgatatggacgatattgaagcgatgaacttcatcgta
gataagctcaaatcgactaaaaacaacggtgaattcttcgatttaatgcgtcgtggtggc
taa
DBGET
integrated database retrieval system
