Polynucleobacter paneuropaeus: DPM16_05110
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Entry
DPM16_05110 CDS
T05507
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPM16_05110 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poh03019
]
DPM16_05110 (pnp)
03016 Transfer RNA biogenesis [BR:
poh03016
]
DPM16_05110 (pnp)
Enzymes [BR:
poh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DPM16_05110 (pnp)
Messenger RNA biogenesis [BR:
poh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DPM16_05110 (pnp)
Transfer RNA biogenesis [BR:
poh03016
]
Prokaryotic type
tRNA degradation factors
DPM16_05110 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
RNase_II_C_S1
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AWW44650
UniProt:
A0A9Q2WMS8
LinkDB
All DBs
Position
complement(994455..996626)
Genome browser
AA seq
723 aa
AA seq
DB search
MTMFKKAVKSFQWGNHQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKTAKPGQDFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFYNEVQVVVHVL
SINPEVPSDIPALIAASAALAVSGIPFSGPVGAARVGYTNGQYLLNPTRTEQTTSELDLI
VAGTQAAVLMVESEANQLSEEIMLGAVVFGHDQMQTAINAINDLVREAGKPEWDWQPAPK
DEPLIAKITALAEGPLREAYQIRQKSARSEKLKATTKEVLAKLAQDGEVDEVAVGNIMFE
IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVIATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSPE
DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAQEGRLHILSKMQE
AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS
TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISTERV
KEVKDYLQEGQVVRVKLLAADERGRLRLSLKAAMADEGGTIEPLAGSTAAEGAETAPISE
ESN
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgactatgtttaaaaaagcagtaaagagttttcaatggggcaatcatcaagtcaccatg
gaaactggcgagattgctcgtcaagcaggtggtgccgttattgttaacgttgatgacact
gttgttatgggtaccgtagttgcctcaaagaccgctaagccaggtcaagactttttccca
ctcactgttgattatttagagaagacttacgcagcaggcaagattcctggtggtttcttc
cgtcgtgaaggtcgtccatctgaaggcgagactttgatctcccgtttgatcgatcgccca
attcgtccattattccctgaaggtttctacaacgaagttcaggttgtagtgcatgtgttg
tcaatcaatccagaagtgccatcggatatccctgctttgatcgctgcttccgcagctttg
gctgtttctggtattcctttcagcggcccagtcggtgcagcccgtgtgggttacaccaat
ggccaatatttactgaacccaacccgtactgagcaaacaacaagcgagctcgatttgatt
gttgctggcactcaagctgcagtattgatggtggaatcagaagcaaatcaattatctgaa
gagatcatgttgggcgcggtagtgtttggccatgaccaaatgcaaactgctatcaatgca
attaatgatttagtccgtgaagctggtaaacccgagtgggactggcagcctgcacctaaa
gatgagccattgatcgctaaaatcactgccttggctgaaggtccattacgtgaggcttat
cagattcgccaaaagagcgctcgttctgagaagctcaaagccactactaaagaagtattg
gcgaagttggcgcaagacggtgaagtggatgaagttgctgttggcaacatcatgttcgaa
atcgaagccaagattgtgcgcagccagattttgaatggtgagccacgtatcgatggtcgt
gatactcgtacggttcgcccaattgaaattcgtaatggcgtattgccacgcactcacggt
tcagcattgtttactcgcggtgaaactcaggcgcttgtaattgcaaccttgggtactgca
cgtgacgagcagatcatcgacgcactcgaaggtgagtaccgtgatcgcttcatgttccac
tacaacatgccaccatttgctactggtgaaactggtcgcgttggtagccccaagcgtcgc
gaaatcggtcacggccgtttagcaaaacgcgcattgattccagtattgccaagcccagaa
gactttgcatacagcattcgtgtggtttcagagattactgagtccaatggctcttcctca
atggcttctgtttgtggtggttgcttagccatgatggatgctggtgttcctgttaaggcg
cacgttgctggcgtagcaatgggcttgatccttgatggtaatcgttttgcggtcttaacc
gatattctcggtgacgaagatcacttaggtgatatggactttaaggtagctggtactgct
aacggtattactgctttgcagatggatatcaaagtacaaggtatcaccaaagagatcatg
caagtagccttggcgcaagctcaagaaggccgtttacatattctgagcaagatgcaagag
gcgatgggttcagttcgcactgaattatcagcacatgcaccacgcatggtcagcttcaag
attcatccagacaagatccgtgaagtcattggcaagggtggcgcaactattcaggctttg
acaaaagagactggttgcagcatcgacattaaagatgatggaactgtaaccattgcatct
actagtgctgaaggcatggctgaagcaaaagcccgtatcgaaggcattactgctgaagct
gaagtcggcaagatctatgaaggcccagttgtgaagttactcgagttcggtgctttggtt
aatattcttcctggtaaagatggcttgctccacatctctgagatttctactgagcgtgtg
aaggaagtgaaagactatttacaagaaggccaagttgttcgcgtgaaactgttggctgct
gatgagcgtggtcgtttacgcctatcactcaaagcggcgatggcagatgagggcggaacg
attgagcccttagctggtagcactgctgctgaaggtgcagaaactgctccaatctcggaa
gaatctaactaa
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integrated database retrieval system
