Polynucleobacter paneuropaeus: DPM16_05540
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Entry
DPM16_05540 CDS
T05507
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
poh
Polynucleobacter paneuropaeus
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
poh03016
]
DPM16_05540
Enzymes [BR:
poh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
DPM16_05540
Transfer RNA biogenesis [BR:
poh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DPM16_05540
Prokaryotic type
DPM16_05540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PseudoU_synth_2
TruB_C
TPR_Slam
Motif
Other DBs
NCBI-ProteinID:
AWW44727
LinkDB
All DBs
Position
complement(1096014..1096925)
Genome browser
AA seq
303 aa
AA seq
DB search
MSVRIDGVVLLDKPAGMSSQGAVTAVKRAFNAEKAGHTGTLDPMATGLLPICLGEATKYS
QDLLDADKTYIAQVQFGSRTDTGDAEGEVVETFDLPIFADQTAIQKALNQVLHQFTGAIK
QVPPMYSALKRDGKPLYEYARAGVELERTPREIIIHRIRWTDIQWPQATLEVSCSKGTYI
RVLAEDIGTALNCGAHLIGLRRTEVGHLNLEQSFTLESIQKSLQESSTYILPVDALLQTL
PHLTVDEQQAKRLEMGQRVPLNLPSIEALVRIYRATAAPHNFIGTADWRSGVLHPKRLIS
QAH
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtacggatcgatggtgtcgtgttgttagataagcctgctggaatgagttctcag
ggggctgtcaccgctgtcaagcgcgccttcaatgcagaaaaagctggtcatactgggact
ctagacccaatggctacaggcttactcccaatttgcctgggtgaggctaccaaatattcg
caagacttactcgatgccgacaagacttatattgcgcaggttcagtttggaagcagaacc
gatactggtgatgctgaaggtgaagtagttgaaacctttgatcttccaatctttgcagat
cagacagcaattcagaaggcgctaaaccaagtccttcaccaatttactggcgccattaaa
caagtgccaccaatgtattctgcgcttaagcgagatggcaaacctttatatgaatatgcc
cgcgctggtgtagagctcgagcgtacgcctagagagatcatcattcatcgtattcgttgg
acagatatacagtggccgcaagccactttggaagtaagttgtagcaagggtacttacatt
cgtgtccttgcagaagatattggtacagcgttgaactgtggcgctcacttgattggccta
cgccgtaccgaagtaggacacctcaatcttgagcagtcctttaccttagaatcaatccaa
aaaagcttgcaagagagctcgacctatattcttccagtcgacgccttattgcaaaccttg
ccccacttaacagtggatgagcagcaggcaaaacgtttagagatggggcaaagagtgccc
ttgaatctgccttcgattgaagccctagtgcgtatttatcgggctactgcggccccccat
aatttcattggaactgcggattggcgatctggggtattacatcccaagcgcttgatttct
caggcccattaa
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