Polynucleobacter paneuropaeus: DPM16_05920
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Entry
DPM16_05920 CDS
T05507
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPM16_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poh03019
]
DPM16_05920
03009 Ribosome biogenesis [BR:
poh03009
]
DPM16_05920
Enzymes [BR:
poh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DPM16_05920
Messenger RNA biogenesis [BR:
poh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DPM16_05920
Ribosome biogenesis [BR:
poh03009
]
Prokaryotic type
rRNA processing factors
DPM16_05920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWW44799
LinkDB
All DBs
Position
1171084..1173687
Genome browser
AA seq
867 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARTYFKEGIDVRNASIKDALREGQEIIVQVEKEERGQKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRDAMSQLDIPDGMSIIARTAGIGRDATELQ
WDLSYLMQLWKAIDEAAQGNSAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIFEQAQ
AFMSVVMPDNLPRVKRYQDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIEETAARTNLEAADEIARQARLRDLGGLIVIDFIDMDSSKAQKDVENR
LRDALRHDRARVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHTQVPVEVAAFLLNEKRAEVIKIESRFKVNVLMVPNKHLETPH
YKLERLRHDDPRLDDQKASYVMAEEAARELEADTIVSRKDADVKVRPEAAVKGITPNQPA
PISQPRPQREAAKKVESSGGLFGFIKKLFSSAEPEVKPEENRGRGRNPNQRNANGNGNNR
NRGRRGERNDRNGERAERPAVDAASGEQKTRPESQGQGRNRNNRNQNGPKPERQPNNANA
ATPATTGEAAPQADAPQNADGEERRGRGRNRRGRGRGQRERGEPNDGESSQANDVATSTV
SAAPVSAPTFSGPPVGMAGSSASMPTQNLAQSFGKHKPAPVTPERTQRSHSSPKSASPAP
AIEVIAKPVAELPKVAFKALEESPLQNVVQSAGMVWVATDSSKHSEVQSQIQTEHISVNL
GRTPKAPATLPDGPMVLVETGGQEKTV
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcaactcaacaagaagagttgcgagttgccatcgtcgat
ggtcaaaaactcatagatattgatattgaagctgccggtcgtgaacaacgtaaaggcaat
atttacaaaggggttatcacccgcattgaaccttccctcgaagcctgcttcgtaaattac
ggtgaagaacggcatggcttcctgccatttaaggaagtagcccgtacctatttcaaagaa
ggtatcgacgttcgcaacgcttcgattaaagatgccttgcgcgaaggccaagaaatcatt
gttcaggtagaaaaagaggagcggggccaaaaaggtgctgccctaacgtcttttatctct
ctggcaggtcgttacttggtgttgatgccaaataatcctcgcggaggtggcgtatctcgt
cgtattgagggtgaagaccgtcaagagctgcgagatgccatgtcgcaattggatattccc
gacggaatgagcatcattgctcgtaccgctggtattggccgcgatgctaccgaattgcaa
tgggacttaagttatctcatgcagttgtggaaagcgattgatgaagcagctcaaggcaac
tcagcgccactgctgatttatttagagtccagcttggtgattcgcgcgatccgtgattat
ttccagcctgatattggcgaaattctgatcgataccgacgacatctttgaacaagcacaa
gcatttatgtcggtagtcatgccagacaacttgccacgggttaagcgttatcaagatgat
gttcccctcttctcgcgtttccaaattgagcatcaaattgaaactgcgtactcacgtacc
gtgcctctaccatctggcggcgccattgtgattgaccataccgaagctttggtgtcggtc
gacgtgaactcggcccgcgctactcgtggatctgatattgaagaaactgcagcgcgcacc
aatttagaggccgccgatgaaatcgctcgtcaagcgcgcttgcgtgacttgggtggtttg
attgtgatcgacttcattgatatggactcgagcaaagcacagaaggatgttgaaaatcgc
ctacgcgatgctttgcgtcatgatcgtgcccgcgttcagatgggcaagatctctaagttt
ggtttgatggaaatgtcacgccagcgtttgcgtcccgctctttctgagggtagtcatgtc
acctgcccacgttgtaatggcacaggccatattcgggataccgagtcttcagcactgcaa
gtcttgcgcatcattcaagaagaggcaatgaaagaaaataccgctgcgattcatacgcag
gtaccagtcgaagtggctgctttcctactcaatgagaaacgcgctgaagtgatcaagatc
gagagtcgctttaaggtcaatgtcttgatggtgcctaataagcacctagagacaccgcac
tacaagcttgagcgtttgcgtcatgatgatcctcgcttagacgatcaaaaagccagctac
gtgatggctgaagaagccgctcgtgaattagaagcagacaccatcgtgagccgtaaagat
gctgatgtcaaagttcgtcctgaagctgcggtaaaaggtatcacaccaaatcaaccggcg
ccaatcagtcagccacgtccacaacgtgaagctgccaagaaagtagaaagttctggaggt
ttgtttggctttattaaaaagctgttctcatctgctgagccagaagtcaagccagaagaa
aaccgtggtcgcggtcgtaatcccaaccaacgcaacgccaatggcaatggcaataatcga
aatcgtggacgtcgcggtgagcgcaacgatcgcaatggtgaacgtgctgagcggcccgct
gtggatgctgcttcaggtgagcaaaaaactcgcccagaaagtcagggccaaggacgcaat
cgtaacaatcgcaatcaaaatggtcctaagcctgagcgtcaaccaaacaatgcaaatgct
gcaacaccagcaacaactggtgaggcggcccctcaagctgatgcacctcaaaatgcagac
ggtgaagagcgtcgtggtcgtggtcgcaatcgtcgcggtcgcggacggggtcaacgcgag
cgtggtgaacctaatgatggagaaagtagtcaagccaatgatgttgctacgagcactgta
tctgcggctccagtttcagcgcctactttctcgggacctcctgttgggatggcgggatcc
tctgcttcaatgcctacccaaaatttggcacaaagctttggtaagcacaagcctgctcct
gtcactcctgagcgcacacagagaagccatagcagtccaaaatctgcaagtccagccccc
gcaattgaagtgattgctaagcctgtagctgaacttcctaaagtggctttcaaggcgcta
gaggaaagtcccctgcagaatgtcgtgcaatcggctggcatggtttgggtagctaccgac
tccagtaaacactcggaagtacagtctcaaattcagacagaacacatttctgtgaatttg
ggccggactcctaaggctccagcaacacttcccgacggcccaatggttttagttgaaacc
ggcggtcaagaaaaaacggtttaa
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