Polynucleobacter paneuropaeus: DPM16_06410
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Entry
DPM16_06410 CDS
T05507
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
poh
Polynucleobacter paneuropaeus
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DPM16_06410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poh03021
]
DPM16_06410
Transcription machinery [BR:
poh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DPM16_06410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
SPO22
Ripply
Motif
Other DBs
NCBI-ProteinID:
AWW45294
LinkDB
All DBs
Position
complement(1258468..1260501)
Genome browser
AA seq
677 aa
AA seq
DB search
MAEVVEEKKTRGRKPKAETSPVEGGEVVLTDRQKARERKAKEKALLKEFAAQQLGSEEQQ
ELRRARLKTLIKMGKSKGYLTHGEMNDVMSDELSDADALETLIGLLNDIGITVYEQAPDA
ETLLLSENTAAATSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVDLLTREGEIV
IAKKIEAGLKDMVMALSACPVTIAEILDNAAKITSGEMEIDQFVDGLVDPNAEDIKLGPE
EPEIDPDAEEGEEGEGEEGGGGGGAATANAKQLEELQQISLEKFAVVRTQADKMRRAFDK
DGYNCPAYIKAQENIRNEMLGFRLTAKSVEKLCDTMRSQVDQVWKLERGIVSLLVDKVGV
NRGEVLKEFPKMSMNLGWTTKLLKENKPYSALLERNVPAIQELQQKLIDIQTRVVLPLPE
LKEVNKQMIAGEKRAREAKREMTVANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGHE
PDAATLALKMEIPEDKIRKIMKIAKEPISMETPIGDDEDSHLGDFIEDSNTLAPAEAALH
DSMRDVVKDVLDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRK
MRHPSRSDKLKTFLEED
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaggtggttgaagaaaagaaaacccgtggccgtaagccaaaggcagaaacttcg
ccagttgaaggtggtgaagttgttctgactgatcgtcaaaaagcccgcgagcgtaaagca
aaagaaaaggccctcttaaaagaatttgctgcacagcagttgggttctgaggagcagcaa
gaactccgccgcgcccgtttgaagaccctgatcaagatgggtaaatccaagggttactta
acccatggtgagatgaatgacgtgatgtctgatgagttgtctgatgcggatgcattagag
actttgattggtctgttgaacgatattggcattactgtttacgaacaagcgcctgatgca
gaaacattgcttctgagtgagaacactgctgcagctacttctgaggaagaagctgaggaa
gaggctgaagctgctttatctactgtggattcagaattcggccgtactaccgatcctgtg
cgtatgtacatgcgtgaaatgggtacggttgatctcttgactcgtgagggtgagattgtc
attgccaagaagattgaggctggcttaaaagacatggttatggctttatctgcctgccca
gtcaccattgcggagattttagataacgctgccaagattacttccggtgaaatggaaatt
gatcagtttgtagatggcctggttgatcctaatgcagaagatatcaagttgggaccagaa
gagccagagattgatcctgatgccgaagagggtgaagagggcgaaggcgaagaaggtggc
ggtggcggtggcgctgccacagcaaatgccaagcaattagaagagctgcagcaaatctct
ctagagaagtttgcagtggttcgtactcaggctgacaaaatgcgcagagcctttgataag
gatggctataactgcccagcctatattaaagcgcaagaaaatattcgtaatgagatgtta
ggtttccgtttgactgcgaaaagtgtggagaagttatgcgacaccatgcgttcacaagtt
gatcaggtttggaaactggagcgcggtattgtgagcctcttagtggataaggttggcgtt
aatcgcggtgaagtcttgaaagaattccctaagatgtcaatgaacttaggctggactacc
aagcttctcaaagagaacaagccttactcagcgcttttagagcgtaacgttcctgcgatt
caagagctacaacagaagctgattgatattcagacgcgcgttgtattgccacttcctgag
ttaaaggaagtaaacaagcagatgatcgctggtgagaagcgcgctcgtgaagctaagcgt
gaaatgaccgtagctaacttacgcttggtaatctccattgccaagaaatacactaaccgt
ggcttacagttcttggatttgatccaagagggcaatatcggtttgatgaaggcggtagat
aagtttgaataccgccgtggctataaattctctacttatgcgacttggtggattcgtcag
gctattacgcgttcgatcgctgatcaagcccgaacgatccgtatccctgttcacatgatt
gagacgatcaacaagatgaaccgtatcagccgtcagatcttgcaagagactggccatgag
ccagatgctgcaactttagcgctgaagatggaaattcctgaggataagattcgcaagatc
atgaagattgccaaagagcctatctccatggagactccaatcggtgacgatgaagattct
catttaggtgacttcattgaagactcgaataccttagctccggctgaagcagctttgcat
gactcgatgcgtgatgtagtgaaagatgtcttggactcattaacgccgcgtgaggcaaaa
gtattgcgtatgcgtttcggtgttgagatgagcacagaccacactctcgaagaagtcggc
aagcaattcgatgtcaccagagagcgtatacgtcagatcgaagcaaaagcactccgtaaa
atgcgtcatccaagtcgtagtgacaagctaaaaactttcctagaggaagattga
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