Polynucleobacter paneuropaeus: DPM16_07320
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Entry
DPM16_07320 CDS
T05507
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DPM16_07320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poh03400
]
DPM16_07320
DNA repair and recombination proteins [BR:
poh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DPM16_07320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DPM16_07320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
nSTAND1
RsgA_GTPase
AAA_23
AAA_22
DnaJ_CXXCXGXG
nSTAND6
BCA_ABC_TP_C
AAA_25
nSTAND3
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
AWW45044
LinkDB
All DBs
Position
1454874..1457759
Genome browser
AA seq
961 aa
AA seq
DB search
MNNEIKIRGARTHNLKNINLDIPREKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLQLMEKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPH
CPEHNLALEAQSVSQMVDTVLSMPEDTKLMILAPVVSERKGEFVDLFQDLQAQGFVRFRV
RSGGGTTNTAKAEIFEVDQLPALKKNDKHSIEVVVDRIKVRPDIQQRVAESFETALRLAE
GKAMVVDMDTGKEMIFSSKFACPICSYSLQELEPRLFSFNNPMGACPSCDGLGHISFFDP
KRIVAHPELSLASGAIKGWDRRNQFYFKLLQTLAKHGGFDLEKPFEKLSKKAQDLILMGS
AEDKIPFEYINERGKPSIREHAFEGIVANFERRYRETDSMTVREELARYQNVRSCPECDG
SRLRKEARFVKVGDGKQSRAIYEISALPLKEAKEYFEELTLKGAKREIADKIVKEIGSRL
RFLNDVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL
IGTLKHLRDLGNSVLVVEHDEDMIRASDYVIDIGPGAGVHGGEIVSQGTPAQVEADPKSL
TGAYLSGREAIAVPEKRIPPDDRYLEILGARGNNLQSVHAKIPVSLLTCVTGVSGSGKST
LINDTLHHAVAQHLYGSTAEPAAHDSIKGLEHFDKVISVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPAARERGYEAGRFSFNVKGGRCDACEGDGVLKVEMHFLPDVYVPCDVCHGK
RYNRETLDIRYKGKNIHEVLSMTIEQAHEFFEAVPVVKRKLKTLLDVGLGYVKLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIQLLLTVIQTLKKQGNTIVIIE
HNLDVIKTADWIIDLGPKGGAGGGQIIATGTPEDVAKNTASFTGHYLALLLKRKNPPAKK
K
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgaaattaaaatccgcggcgcacgcacgcacaaccttaaaaatatcaatctg
gatatcccaagagaaaagctagtggttctcactggtctatcgggttctggcaaaagctcc
ctcgcttttgacaccttgtacgccgagggtcaacgtcgctatgtcgaatctctttcggca
tacgcccgtcaatttctgcaactgatggaaaagcctgatgtcgatgttatcgaaggcctc
tctccagcaatctcgattgaacaaaaagcgactagccacaatcctcgctcaacagtgggc
accgttacagaaattcatgattacttgcgcttgctatttgctagagcaggcacaccgcat
tgccctgaacacaatcttgccttagaagcccaaagcgtctcacaaatggtcgacaccgta
ttgtcgatgcctgaagatacaaagttaatgatcttggctccggtagtcagtgaacgaaaa
ggggaatttgttgacttgtttcaagatctgcaagctcaaggatttgtgcgctttcgcgtt
cgatctggtggtggcacaacaaatactgccaaagccgaaatctttgaagtagatcaactg
cctgcactcaagaagaatgataagcactcgatcgaagttgtagtagatcgcatcaaagta
cgtccagatattcagcaacgtgtcgcagaatcttttgagactgccctgcgcttagctgaa
ggtaaggccatggttgttgatatggacaccggcaaagagatgatcttctcgagtaagttc
gcatgcccaatctgctcctactctttgcaagaacttgaaccacgcctgttttcatttaat
aacccgatgggtgcttgcccatcgtgcgatggccttggtcatatctctttttttgatccg
aagcggattgttgcgcaccctgaattatctttagcctcaggtgcaattaagggctgggat
cgtcgcaatcagttttacttcaaacttttacaaacgcttgctaaacatggtggatttgat
cttgaaaagccttttgaaaagttaagcaagaaagcacaagacctgatcctcatgggctcc
gccgaagataagattccatttgaatatatcaatgaacgtggcaagccaagtattcgggag
catgccttcgaagggatcgtagcgaattttgaaagacgttatcgcgaaactgattcaatg
acagtgcgtgaagaactcgcgcgctatcagaatgttcgctcatgcccggagtgtgatggt
agccgtttacgcaaagaggcccgcttcgttaaagtcggcgatggcaaacagtcccgcgcg
atttatgaaatcagcgctctacctttaaaagaagcgaaagagtattttgaagagctcacc
ctcaaaggtgctaagcgagaaatcgccgataagattgtcaaagagattggctcacgctta
cgctttttaaatgatgtgggcttagattacctttccttagagcgtagcgcagataccctc
tctggcggcgaagcacagcgcattcgacttgcctcacagattggctctggcctgactggc
gtgatgtacgttctagatgaaccctcgattggtttgcaccaacgcgataacgatcgctta
attggtactctcaaacacttacgcgatttaggtaatagcgtgttggttgttgagcatgac
gaagatatgattcgcgcttcagattacgtgatcgatatcggcccaggcgctggagttcat
ggcggtgaaatcgtttcacaaggcacacccgctcaagttgaggcggatcccaagtcactc
actggcgcctatctctctggaagagaggctattgccgttccagaaaaacgcattcctccg
gatgatcgctacctcgaaatcttgggcgcacgaggcaataatttacagtccgtacacgcg
aagattccagtaagtcttttgacctgtgtgactggcgtgtcaggctcagggaaatctact
ctaattaatgacactctgcatcatgcagtggcacaacacttgtatggctcgaccgcagaa
cctgcagcacatgattcgattaaaggacttgaacacttcgacaaagtcattagtgttgat
cagtcccccattggcagaacaccgcgctctaatccagcgacctataccggcctatttacg
ccaattcgtgaactctttgctggggtccctgctgcccgtgaacgtggctacgaagctggt
cgcttctcgttcaacgtcaaaggtggtcgttgtgatgcctgcgagggtgatggcgttctg
aaggtggagatgcacttcttgccagatgtctatgtcccctgtgatgtttgtcatggcaaa
cgctataaccgagaaaccctagatattcgttacaaaggaaaaaatattcatgaagtgctc
tcgatgacgatcgagcaggcgcatgagttttttgaagctgtacccgtagtaaaacgtaag
ctcaagaccttacttgatgttggcttgggttacgtcaagttagggcaaagcgccactacc
ctatctggtggtgaagcgcaacgcgtgaaactttctttagagttatcaaaacgggatact
gggcgaacgctctatattttggatgagccaactacaggcctacatttccatgacattcaa
cttttgctgacagtcattcagacactcaagaaacaaggcaatacgattgtgatcattgag
cataatctggacgtcattaaaacagcagactggattatcgatttagggccaaagggtggt
gctggtggtggacaaattattgccaccggaacccctgaagatgttgctaaaaatactgct
agttttacagggcactatttagcgctactactgaagcgcaaaaatccgcctgctaaaaag
aaataa
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