Pseudomonas orientalis: BOP93_01295
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Entry
BOP93_01295 CDS
T05323
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOP93_01295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_01295
03400 DNA repair and recombination proteins [BR:
poi03400
]
BOP93_01295
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BOP93_01295
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BOP93_01295
DNA repair and recombination proteins [BR:
poi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BOP93_01295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
PSII_Pbs27
Motif
Other DBs
NCBI-ProteinID:
AUZ44257
UniProt:
A0A2L0RQ49
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All DBs
Position
323770..325707
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AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRAGQEETVRAILGGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLKRHGISAGSIDSAQSREDANDVMVRARSGELKILMISVERLKNERFR
NFLQSVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAPDDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERADQPSIVYVTLQKTAE
QIAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGRPSDCLVLANRDSLNVLENFVYGDTPEQEGIRRVLEELQ
AARGEGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLIEPEAL
LARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKALDYFQEQGLIELE
SKQMTEVYSLLNTDFDAQVLSTELYTGFKRHETTEVARIHAMLDLFATERCLGQRLALYF
GDENAPQRCGHCSVCHGHVAHLPAPPSLPPLVDKNFMGLCGDFIHRHHEHTGQLPGAERL
TRFLGGISVPLFTKLKARGIPGFAALEDYPYAEVREWAEAHLNDL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgataccctccagcaggtctttggttatccgcagttccgtgcgggccaggaagaa
acggtccgcgccatattgggcggtcgttcggcggcggcgattttcccgaccgggtctggc
aagtcgctgtgttatcaactctcggccgtattgctgccgcacctgacgctggtggtttcg
ccgctgttggcgttgatgcaggaccagttgggtttcctcaagcgccacggcatttcagcc
ggcagcatcgattcggcccaaagccgcgaagacgccaatgatgtgatggtgcgcgcgcgt
tccggtgagctgaaaatcctgatgatttccgtggagcgcttgaagaacgagcgctttcga
aacttcctgcaaagtgtgcagatctcgctgctggtggtggacgaggcgcactgtatttcc
gagtggggccacaacttccgcccggactacctgaagctgccggactaccagcgtcagttc
aatatcccacaagcattgctgctgacggctacggcgacgcccaaggtgattgccgacatg
caggcgaagttcgccattgcgccggacgatgtggtcaccacgggcttttaccggcccaac
ctgaacctgttggtcgagccggtcagtggggcggacaagcgccgccgtcttgtgcaatgg
atgagcgagcgagccgaccagccgagcatcgtctacgtcaccctgcagaaaaccgccgag
cagattgccgagcacctgaaccgcaatggcatccaggccgaggcgtatcacgccgggttg
ccccacgataaacgcgagggcatccagcagcgtttcatgggcgggcgctccaactgcatc
gtcgccaccatcgcgtttggcatgggcatcgacaaaagtgacatccgtaacgtggtgcac
ttcgacctgcccaaatccatcgagaactacagccaggaaatcggccgcgccggtcgcgat
gggcggccctccgactgtctggtgctggccaaccgcgacagcctcaatgtgctggagaac
ttcgtgtacggcgacacgccggagcaggagggtatccgtcgggtgctggaagaattgcag
gccgcacgtggcgagggccagtgggagtttttgctgaggtcgttgtcggaccacagcaat
attcgcgagctgccgttgaagaccctgctggtgcagttggagctcaagggcgtgatcgcg
ccgcgctatgcgttttatgccgaataccgtttcaagtacctgatcgaacccgaggccttg
ctcgcacgtttctccggcgagcggcagcaatttgtcgcggcgatcatccaggtgtgcaaa
cgcgcaaaaacctgggcaacggtggatttcgacgcgctgtatcagcagcacaatgccgag
cgcagccgggtggtgaaggcgctggattactttcaggagcagggcctgatcgagctggaa
agcaagcagatgaccgaggtctacagcctgctcaacaccgatttcgatgcgcaggtgttg
agcaccgagttatacacaggcttcaagcgccatgagacgacggaggtggcgcggattcac
gccatgctcgatctattcgccaccgagcgctgccttgggcaacgcctggcgctgtatttt
ggcgatgaaaacgcaccgcagcgttgcgggcactgctcggtgtgccacggacatgtcgcg
cacttgccggcaccgccgagcttgccgccgcttgtggataaaaacttcatggggctgtgc
ggtgattttatccacaggcatcatgagcacaccggccagttaccgggtgcggaacggctg
acgcgctttctgggcgggatcagcgtgccgttgttcaccaagttgaaagcgcggggcatt
cccggtttcgccgcactggaggactacccctacgccgaggtacgcgagtgggccgaggcc
catttgaatgatctgtaa
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