Pseudomonas orientalis: BOP93_02415
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Entry
BOP93_02415 CDS
T05323
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
poi
Pseudomonas orientalis
Pathway
poi02024
Quorum sensing
poi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOP93_02415
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BOP93_02415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_02415
03036 Chromosome and associated proteins [BR:
poi03036
]
BOP93_02415
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BOP93_02415
Chromosome and associated proteins [BR:
poi03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BOP93_02415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AUZ44475
UniProt:
A0A0R3A1E6
LinkDB
All DBs
Position
586599..586859
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AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAGDEAADAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaataccttacgtaaagagaaagtg
ggggtttccatttatctggtcaacggtatcaagttgcaaggtacgatcgagtcgttcgac
cagttcgtgatcctgctgaaaaacaccgtcagccagatggtttacaaacacgctatctcg
acagtcgtccctgttcgtccaatccgtctgcctagcgcagccggtgatgaagcagctgac
gctgagccaggtaacgcctga
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