KEGG   Pseudomonas orientalis: BOP93_02415
Entry
BOP93_02415       CDS       T05323                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
poi  Pseudomonas orientalis
Pathway
poi02024  Quorum sensing
poi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:poi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BOP93_02415
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BOP93_02415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:poi03019]
    BOP93_02415
   03036 Chromosome and associated proteins [BR:poi03036]
    BOP93_02415
Messenger RNA biogenesis [BR:poi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BOP93_02415
Chromosome and associated proteins [BR:poi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BOP93_02415
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AUZ44475
UniProt: A0A0R3A1E6
LinkDB
Position
586599..586859
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAGDEAADAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaataccttacgtaaagagaaagtg
ggggtttccatttatctggtcaacggtatcaagttgcaaggtacgatcgagtcgttcgac
cagttcgtgatcctgctgaaaaacaccgtcagccagatggtttacaaacacgctatctcg
acagtcgtccctgttcgtccaatccgtctgcctagcgcagccggtgatgaagcagctgac
gctgagccaggtaacgcctga

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