Pseudomonas orientalis: BOP93_07520
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Entry
BOP93_07520 CDS
T05323
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BOP93_07520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poi03400
]
BOP93_07520
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BOP93_07520
DNA repair and recombination proteins [BR:
poi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BOP93_07520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AUZ45454
UniProt:
A0A2L0RUQ8
LinkDB
All DBs
Position
complement(1725956..1729405)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEATGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAAALPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctgaccgccgacagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcactttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccgcctgccggaa
ctggcccacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcgccgacc
aaattcctgctgggcagcagcctggtgctggatgtcggccagaaactcgacgtggagcag
atgcgcacgcgcctggaggccaccggctaccgctatgtcgacacggtgtacgaacacggc
gaattcaccgtacgcggtgcattgatcgacctgttcccgatgggcagcaagttgccgtat
cgcatcgacctgttcgatgacgagatcgaaacgctgcgcaccttcgacccggaaaaccag
cgctccatcgataaagtcgagtcgatcaagctgctgccggcacgggaatttcccctgcaa
aaagacgcggtcacgcgcttcaaggcgcgctttcgcgagcgcttcgatgtggacttccgt
cgttgcccgatcttccaggacttgagcagcgggattacgccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctcgaccctcttcgattacctgccccaggacacccag
gtgttctcgctgccgggcatcgagcaggcggcggaaaatttctggaacgacgtgcgcaac
cgctatgaagagcgccgcgtcgacccatcccgacctttattgccccccgccgagctgttc
ctgccggtggaagactgcttcgcgcgcctgaaaaactggccgcgcgtggtcgccagccag
caggatgtggacgccggcagcggccgcgagcgcttccccgcagcggcgctgccggatttg
gcgatccaggccaaagccacacaaccgctggaagcgctgtccaacttcctcggcgacttc
cccggccgcgtgctgtttaccgcagagtccgccggccgtcgcgaggtgttgctggagttg
ctggagcgcctgaagctgcgcccgaaaaccgtcgacagctggccggattttgtaaaaagc
aaggagcgcctggcaatcaccatcgcgccgctggacgaagggctgctgctggatgacccg
gccctggccctgatcgccgaaagccctttgttcggccagcgtgtgatgcagcgtcgccgt
cgcgaaaaacgcgccgacgccaataacgatgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccacggcgtcggccgctacctcggtttgcagacc
ctggaaatcgacaaccaggccgccgaattcctcaccatggaatacgccgaaggcgccaag
ctctacgtgccggtggccagcctgcacttgatcgcgcgctacaccggcagcgacgacgcg
ctggcgccgttgcatcgcctgggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgaactgctcgacatctacgcccgccgcgccgcccgc
gaagggtatgcgttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgcggcgatgtgggcttcggcaagaccgaagtggcc
atgcgcgccgcctttattgcggtgcatggcggcaggcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
acggtggaagtgatgagccgcttcaaatcggcgaaggaagtcaatgccgcgattgccgac
ctggccgaaggcaagatcgatatcgtgatcggcacgcacaagctgctgtcggacgatgtg
aagatcaaaaacctgggcctggtgatcatcgacgaagaacaccgctttggtgtgcgccag
aaggagcaactcaaggccctgcgcagcgaggtcgacattcttacgctcacggcgacgccg
atcccacgcacgctgaacatggcggtgtcgggcatgcgcgacctctcgatcatcgctacg
ccgccggcgcgccgcctgtcggtacgcaccttcgtgatggagcagaacaaaagcacggtc
aaggaagcactgctgcgcgaattgctgcgcggtggtcaggtgtattacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgaccttgccgaactggtgccggaagcccgcatc
gccatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccattatcgagaccggtatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagttgcaccaa
ctgcgcggccgcgtcgggcgcagccaccaccaggcctatgcctacctgttgacgccgccg
cgccagcaaattaccagcgatgcggaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgcgggttttgtgctggctaccaacgacctggaaatccgtggtgccggcgaactg
ctcggcgacggccagagcgggcagatccaggcggtgggtttcacgctgtacatggagatg
ctggaacgcgcggtgaaagccattcgcaagggcgagcaacccaacctcgatcaaccgctg
ggcggtggcccggaaatcaacctgcgcctgccagcgctgattcccgaagactacctgccg
gatgtgcatgcgcggctgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgttgccggaaccgaccaag
aacctggtgcgcctgaccctgctcaagttgcaggccgagcagctgggcatcaagaaggtc
gacgccgggccgcaaggcgggcgtatcgaattcgaagcccagacgccggtggacccgttg
gtgctgatcaagctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgcttcaataccctggaggcgctg
tttgagcgcctcattccgaaatctgcttga
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integrated database retrieval system
