Pseudomonas orientalis: BOP93_18385
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Entry
BOP93_18385 CDS
T05323
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOP93_18385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_18385
03400 DNA repair and recombination proteins [BR:
poi03400
]
BOP93_18385
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BOP93_18385
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BOP93_18385
DNA repair and recombination proteins [BR:
poi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BOP93_18385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
GerE
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AUZ47478
UniProt:
A0A2L0RZN5
LinkDB
All DBs
Position
complement(4240355..4242481)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQSAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCIDGVQTWDATEPARQALSTIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTAAKTSTSQASQLVRGEEREQWEALRTLRR
KLAQEHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVLGGQAE
APKEIADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAEAIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEIAPLFAGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggctcaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccagcggcggtgacgcgctggtcctgatgcct
accggtggcggtaaatcgttgtgcttccaggtgccggcgctgttgcgcaatggactggcg
gtggtggtgtcgccgctgatcgcgttgatggacgatcaggtcgccaccctggaagaattg
ggtgtcgccgccgctgccttgaactccaccctcagcgccgagcagcagcgcgacctggcc
gcgcgaatcaagcgcggcgaagtgaagatgctctacctggcgccggagcggttggtgcag
ccgcgcatgctggcgttcctgcagagcctggaaatcgccctgttcgccatcgacgaagcc
cactgtgtgtcgcaatggggccacgattttcgccgcgaatacctgcagctcggtcagctg
gcggagctgttccccgatgtgccgcgtatcgccctgaccgccaccgccgacaagcgtacc
cgcgaagagatcgtcgagcgcctgcatttgcagagcgccgagcgtttcctgtcgagcttc
gaccgaccgaatattttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctc
gcgtttctctccgagcggcgcagcgatgcgggtatcgtctattgcctgtcacgcaagaag
gtcgatgaagtcgccgcgttcctctgtgaacagggttacccggcgctgccttatcacgcc
ggcttgcccaatgaaacacgctcggcgcaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggcgacgatcgcgttcggcatggggatcgacaaatccaacgtgcgtttcgtg
gcacacatggacctgcccaagtctcttgaggcctattaccaggaaaccggccgcgccggc
cgtgacggcctgccggcggatgcctggatggtctacggcctgcaggatgtggtgatgctc
aagcagatgctgcagaactccgaaggcgatgagcgccacaagcgtctggagcagcacaaa
ctcgacgccatgctctcgctgtgtgaagagacccgctgccgccgccagacgctgctggcg
tatttcgatgaagacatgccgcaaccgtgcggccactgcgataactgcatcgatggcgtg
cagacctgggacgccaccgagccggcgcgccaggcgttgtcgacgatctaccgcaccggc
cagcgctatggcgtcggtcacctggtggatgtattgctgggcaaggacaacgaaaaagtc
cgcagcttcggccacgagaaactctcggtctacggcgtcggcaaagcgcgtgccgaaggc
gaatggcgttcgctgttccgccagatggtggcgcgcgggctggtcgacatcgatatcgaa
ggctacggcggtctgcgcctgaacgacagctgccggcccttgctcaagggcgaagtcagc
ctggagctgcgccgcgacctcaaaccgcagaccgccgccaagaccagcaccagccaggcc
agccaactggtgcgtggcgaggagcgcgaacagtgggaggccttgcggaccctgcggcgc
aagctggcgcaggagcacagcgtgccgccctacgtcatcttccccgactcgaccttgctc
gagatgctgcgcgagcagcccaccagcatggccgaaatggccagggtcagcggcgtgggc
gcacgcaagctggagcgttatggccaggccttcctcgaggtgctcggcggccaggccgaa
gcaccgaaggaaatcgccgatatccgccacgaactgatcagcctggcccgcgccggcatg
accccgatccagatcgccggccaactgcaatgctcggaaaagaatgtgtatacgttgctg
gccgaagccatcggcaagcagcaattgtccctggagcaggcccttgatttgccggaggat
ttgcttggcgaaatccaggatgcctttctcgacggggagggcgaattgccacctgtcgcg
gagatcgcgccgctgtttgccggacgggttcccgagggtgttttgtactgcgtacgtgcc
gctttgcagtcggaattcgaaatttag
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