Pseudomonas orientalis: BOP93_18770
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Entry
BOP93_18770 CDS
T05323
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
poi
Pseudomonas orientalis
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_18770
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BOP93_18770
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BOP93_18770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
nSTAND3
AAA_22
AAA_25
NACHT
T2SSE
ABC_tran
ResIII
nSTAND_NTPase5
SLFN-g3_helicase
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AUZ47552
UniProt:
A0A2L0RZV0
LinkDB
All DBs
Position
complement(4321574..4325485)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPTLDQLLDTLDHAMLADRHRLRRQLLELRKKPDEQKLAQWVARMQASCAQVTARR
ASLPVIRYDDSLPIAAKRDEIKAALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQYGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSARRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTINKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLAANQQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLALALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVENHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQNIAGLSMTVYPALVEENGTVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGEATLPRDGAGLAAL
AERKRGGWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPAQWFKELPRYLRAIELRLEKLPSQVQKDRVWSTELSGLWTQYQNRLNKHTQEGKR
DPQLELYRWWLEEYRVSLFGQQLGTKVPISDKRLSKQWSQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcccccaccctcgaccaactgctcgacaccctcgatcacgccatgctc
gccgaccgccaccgtttgcgccggcagttgcttgagctgcgcaaaaagcccgacgagcaa
aagctggcgcagtgggtggcgcgcatgcaggcatcctgcgcccaggtcacggcgcggcgt
gcgagcctgccggtgattcgctacgacgacagcctgccgattgcggccaagcgtgacgag
atcaaggcggcgctgaacaagcatcaggtgctgatcattgccggcgagaccggctcgggt
aaaaccacccagttgccgaagatctgcctggaaatcggccgtggccaatacggcctgatc
ggccatacccagccacgccggatcgccgcgcgcagcgttgccagccgtgtcgccgaagaa
ctggccaccccgctcggcgcgttggtcggctatcaggtgcgcttcgaggaccagagcgat
tccaatacgctgatcaagctgatgactgacggtatcctgctggcggaaacccagaacgac
cggtacctggaacgctatgacacgatcatcgtcgacgaagcccacgagcgcagcctgaac
atcgactttctgctcggttacctcaagacgctgttgccgcgccggcccgacctgaaagtc
atcatcacctcggccaccatcgacctggagcgtttctccaaacacttcgacgacgcgccg
attgtcgaggtctcgggccgcacgttcccggtcgacacctggtaccgcccgctgaccctg
gaacaggacgaggagggcaaccgcgtcgaggacgacctcaccgtcgaccaggcgatcctc
gccaccctcgatgaaatcgccgcctatgaacgcagcgcacggcgcagccctggcgatgtg
ctggtgttcctgcccggcgaacgcgagattcgcgacgccgccgagatgctgcgcaaggcc
cagctcaagcacacagagatcctgccgttgtatgcgcgcctgtcaccggccgagcaacag
cgtattttccaatcgcacccgggccgccgcgtggtactggcgaccaacgtcgcggaaacc
tcgttgaccgtgccgggcattcgttatgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctaccgcgccaaggtgcagcgcctgccgatcgaggcgatctcccaggccagtgcc
aaccagcgtaaaggccgttgcggccgggtcgagccgggcatctgcattcggttgtacagc
gaagaagactttatcgggcgcccggaatttaccgacccggaaatcctgcgcaccaacctc
gccgctgtgatcctgcagatgctgcacctgcgcctgggcgaaatcaccgacttcccgttt
atcgaaccgccggatggcaaggccatcagcgacggtttcaacctgctgcaggagctgtcg
gcggtggaccgcaacagccagctcacgccgttgggccgccagctggcgcgcctgccggtg
gacccgcgcatgggccgcatgctgctcgaagccgccaagctgggcagcttgcaggaagtg
ctgatcgtggccagcgccatgtcgatccaggacccgcgcgagcgtccgccggagcgccag
caggccgccgaccaggcccatgcgcagtggaaagacgcggattcggacttcgccgggctg
gtcaatctgtggcgcggctttgaagaacagcgccaggcactgaccgccagcccgctgcgc
aactggtgtcgaaagaacttcctcaactacctgcgcctgcgcgaatggcgcgactcccat
cgccagttgagtttgatctgccgcgacatgcagttgacgatcaacaaggaaccggccgat
ttcccgaaattgcacaaggcggtgctgtccggcttgctcagccagatcggccagaagacc
gaggacggcgactacctgggcgcacgtcagcggcgcttctggattcatccctcctcgggt
atcggcaagaaacgcccgcagtggctgatgaccgccgaactggtggaaaccaccaagctg
tatgcgcgcatggtggccaagatcgacgccgactggatcgaaccgctggccgggcacttg
atcaagaaaaaccatttcgaaccgcattgggagaaaaagcgcggccaggtggtggcgttt
gaacagatcaccttgttcgggctgatcgtggtcggacgccggccggtgcattacgggccg
atcgatccggtggtgtcgcgcgagctgtttatacgcgaagggctggtgcgtggggaaatc
cagtcgcgagccaagtgccttgcggccaaccaacaactgctggagcagctcgacgaactg
gaagccaaggcgcgccgacgcgacatcctggccgacgaagaaaccctctacgccttctac
gatgcgcgcctgccggcagagatccatcagacggcgaccttcgacagctggtacaaggtc
aacagccagaaagacccgcaactgctgatcatgcgcgaggaagacgtgctggcccgcgaa
gccagtgaagtcaccgccgcgcattaccctgacaccttgcacctgggcgacctggccctg
gccttgagttaccacttcgagcccaaccacccgcgtgacggcgtcactctgcgcgtgcct
gcgccattgctgccggcattgcccgccgagcgcctggaatggctggtgccgggggtgatc
gaagccaagtgcatcgctctggtgcgcaacttgcccaaggcgctgcgcaaaaacttcgtg
ccggtgccggacttcgttaaggcggcgctgcagcgcatcgagtttggccagggttctctg
ccccaggcgctcggccgcgaactgctgcgcatgaccggtgctcgggtcagcgacgaagcc
tgggccgaggcggcgcaacaggtggaaaaccacctgaagatgaacctggaagtggtcgac
ggccagggcaagttccttggcgaaggccgtgatttggcagagctgacggcgcgtttcgcc
gaggccagccaggcggcactggcggttccgcaaacggcgaaaagccagcagccggtggag
gccaaggtgtttgcggcggtcgctgagaagacccagcagaacatcgccggcctgtcgatg
acggtatacccggcgctggtggaagaaaacggcacggtcaaggaagggcgtttctccacg
gccgccgaggccgaattccagcaccgccgtgccttgcagcgtctgttgatgcagcaactg
gcggaaccggcgaaattcctgcgcggcaaattgccggggctgacagagttgggcctgatg
taccgcgaactggggcgcatcgatgcgctggtggaagatatcctgctcgccagtcttgat
acttgcgtactggaaggcgaagccactttaccgcgcgatggtgccgggctggccgcgctg
gccgagcgcaagcgtggcggctggaccgaacacgccgagcgtctggcgcgcctgaccctg
gacgtgttgaaactctggcatggcctgcaaaagcgcttcaagggcaagatcgacctggcc
caggcggtggctttgaacgatatcaagcagcaactgagtcatctggtgtacccagggttt
gtgcgcgagaccccggcgcagtggttcaaggaactgccgcgttacctcagggccatcgag
ctgcgcctggaaaaactgccgagccaggtgcagaaggaccgtgtgtggagcaccgaactg
agcggcctgtggacgcaataccagaaccgcctgaacaaacacacccaggaaggcaagcgc
gacccgcagttggagctctatcgctggtggctggaggaatatcgagtgtcgttgtttggc
cagcaattgggcaccaaggtgccgatttccgataagcgtctgagcaagcaatggagccag
gtagagccctga
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