Pseudomonas orientalis: BOP93_22590
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Entry
BOP93_22590 CDS
T05323
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOP93_22590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_22590
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BOP93_22590
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BOP93_22590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUZ48261
UniProt:
A0A2L0S232
LinkDB
All DBs
Position
complement(5176494..5177828)
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AA seq
444 aa
AA seq
DB search
MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK
LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR
QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVQQWVVPVDKKRKPELFVHLMR
KGRWKQVLVFAKTRNGVDALVDKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE
MLTRQTLTRKMEPDFVPEHRVPDTDASGQVVKKPKKPKKPKTSGGGGKRNLGKWVDSGDA
ALVEPSIKPVRKVPVFNTGPRKKK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccacccttggcctgatcgaacccttgctgcgcgcccttgagacgcttggc
taccagaccccgacgccggtgcaggcgcaagccattccggcggtgctggccggtcgcgac
ctgatggccgccgcccagaccggcaccggcaagaccgccggctttgccttgccgctgctg
caactgctgacgatggaagggccgaaagtcgccgccaactcggcgcgtgcgctgatcctg
tgccccacccgtgaactggccgagcaggttcacgccagcgtcgccgaatacgcccagcac
ctgccgctgaccacgtatgcggtgtacggcggcgtgagcatcaacccgcagatgatgaag
ctgcgcaagggtgtcgacatcctggtcgccacccctggccgcctgatcgacctgttccgc
cagaacgcgctgaaactcaatcagctgcaaaccctggtgctggatgaagccgaccgcatg
ctcgacctgggcttctccgaagaactggcgaacatctaccgcatgctgccgaagaaacgc
cagaccctgctgttctccgccacgttctccgatgacatccgcctgctcgccgggcagatg
ctcaatgacccgctgagtatcgaagtcagcccgcgcaacgtcgccgccaacaccgtgcag
cagtgggtggtgccggtggataaaaagcgcaagccggaactgttcgtgcacctgatgcgc
aagggccgctggaagcaggtgctggtattcgccaagacgcgtaacggcgtggacgcgctg
gtggacaagttgcagggcctgggcgtcaatgccgacggcatccatggcgacaaaccccag
gcgacccgccaacgcgcactggaccgcttcaaggccagcgaagtgcagatcctggtggcc
accgacgtggcggcccgtggcctggatatcgaagacctgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaagactacatccaccgtatcggccgtaccggccgtgcgggcaac
accggcgaggcgatttcgctggtgtgtgccgatgaagtgaacatgctctcggcgatcgag
atgcttacgcgccagaccctcacccgcaagatggagccggatttcgtacccgagcaccgc
gtgccggataccgatgccagtgggcaggtggtgaagaagccgaaaaagccgaagaagccc
aagacatcgggcggcggcggtaagcgcaatttgggtaagtgggtggacagtggtgacgcg
gcgctggtggagccgtcgatcaagcctgtgcgcaaggtgccggtgtttaatacagggccg
cgtaagaagaagtga
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