Pseudomonas orientalis: BOP93_22635
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Entry
BOP93_22635 CDS
T05323
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
poi
Pseudomonas orientalis
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_22635
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BOP93_22635
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BOP93_22635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
ResIII
AAA_22
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AUZ48270
UniProt:
A0A2L0S1X1
LinkDB
All DBs
Position
complement(5185008..5187515)
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AA seq
835 aa
AA seq
DB search
MNSLPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPSTRIEVVTEGILTRRLQDDPALDGVGL
LIFDEFHERSLDADLALALSLNGRDLFRDDQPLKILLMSATLEGERLAGLLDNAPILRSE
GRMFAVQMRWGRPYQAGEFIEPRVVNTILEALHDETGSVLVFLPGQAEIRRVHQQLSDAL
GHQPDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEVQHDGLAAYGSAEILA
ADLAGLALQLARWGVTPAQLVWLDVPPTAAYAQAQDLLVRLGALNDDKLTAHGQQMAELP
AHPRIAHLLLRGQDLGLAAMACDVAALLGERDILRGGGADLHSRLALVSGEERARGTQGG
VQRARQLARQYRGYLRGKATQPVADPDHPRWLGALLALAYPDRIAQQRRPGGAEYRLANG
RAALFAEADSLMKQAWLVIADLGSRQGQREERIYLAADFDPALFDTVLAEQVRNVDQLDW
DEREGVLRAERQRKVGELVLSREPLTGLDEAARSQALVNLVRRKGLELLPWTPELRQWQA
RVLLLRQLDAGNTSEWPDVSDSALLAGLEHWLMPYLGKVSRLSHFANLDISSYLHNLLPW
PLPQRLEELAPQHVKVPSGSSVRLDYSEQPPILAVRLQELFGLADTPRIAGGRQVVKLHL
LSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIKPRK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttgccgattgatgatgttttacctgccctgcgtgacgccttggcgattcgc
catgaagccgtgctggaagcgccgcccggcgccggtaaaaccacccgcgtgcccttggcc
ttgttgaacgagccctggctggccgggcagaccatcctgatgctcgaaccccggcgcctc
gccgcgcgggccgctgccgaacgcctggccagcgagctgggtgaaaaggtcggtgaaacg
gtcggctatcgcatccgcctcgacagcaaggtcggacccagcacgcgcatcgaagtggtc
accgaaggcatcctcactcgccgcttgcaggacgacccggcgctggatggcgtgggcctg
ctgatctttgacgaatttcacgagcgcagcctcgatgccgacctggcgctggccctgagc
ctcaacgggcgcgacctgtttcgcgatgaccagccactgaaaatcctgttgatgtccgcc
accctcgaaggcgagcgcctggcgggtctgctggacaatgcgccgatcctgcgcagcgaa
gggcgcatgtttgcggtacagatgcgctgggggcggccataccaggccggggaattcatc
gagccgcgggtggtgaacacgattcttgaagccctgcatgacgaaaccggcagcgtgctg
gtgttcctgccggggcaggcggagattcgccgggtccatcagcaactgtccgacgccttg
ggtcatcagcccgatgtgctgctgtgtccgctgcacggcgagctcgacctcaatgcccag
cgcgccgccatcgaccccgcgccggccggcaagcgcaaagtggtgctggccaccaacatt
gccgagaccagcctgaccatcaacggcgtgcgcgtggtgatcgatgccgggttggcgcgg
gtgccgcgtttcgacccgggcagcggcatgacccgcctcgacacccagcgcatctcccgc
gccagcgccacccagcgcgccggtcgggcagggcggttggagccaggcgtgtgttatcgg
ttgtggtccgaagtccagcatgacgggctggccgcctacggcagtgcggaaatcctcgcc
gccgaccttgccggcctggccttgcaactggcgcgctggggtgtcacccccgcgcaactg
gtatggctcgatgtgcccccgaccgccgcctacgcccaggctcaggatttgctggtgcgc
ctcggcgccttgaatgacgacaagctcaccgcccatggccagcagatggccgaattgccg
gcccatccgcgtatcgcccacttgctgttgcgcgggcaggacctggggctcgcggcgatg
gcgtgtgatgtcgcggccttgttgggcgagcgcgatatcctgcgcggcggcggtgccgac
ttgcacagtcgcctggcgctggtgtccggcgaggagcgtgcgcgcggcacccagggcgga
gtgcagcgggccaggcagttggcgcgccagtatcgcggctatctgcgaggcaaggccacc
caaccggtggccgatcccgaccatccacgctggctcggcgccctgctggcactggcctat
ccggaccgcatcgcccagcagcgtcgccctggtggcgccgaataccggctggccaatggg
cgcgccgcattgtttgccgaagccgacagtttgatgaaacaagcctggctggtgatcgcc
gacctgggcagccgtcagggccagcgcgaagaacgcatctacctggcggcggatttcgac
ccggcgctgttcgacacggtgctggccgaacaagtgcgcaatgtcgaccaactcgactgg
gacgagcgcgaaggcgtattgcgtgccgaacgccagcgcaaggtcggtgagctggtgctc
agccgtgaaccgctgaccggacttgacgaggccgcgcgcagtcaggcgctggtcaaccta
gtgcgacgcaaaggcctggagctgttgccctggaccccggaactgcgccaatggcaggcg
cgcgtgctgctgctgcgccagctggatgccggcaacaccagcgaatggcccgacgtcagc
gacagcgctttgctggccggcctggagcactggctgatgccctacctgggcaaagtctcg
cgcctgagccatttcgccaacctggatatttccagctacctgcacaacctgctgccctgg
ccgctgccccaacgcctggaagaactggcgccccagcatgtgaaagtgccgtcgggctcg
tcggtgcgccttgactacagcgaacagccgccgatcctggcggtgcgcctgcaggagctg
ttcgggctggcggatacaccacgcattgccggcgggcgccaagtggtcaagctgcacctg
ctgtcgccggcgcggcggccggtgcaggtcacgcaggacctggccaacttctggcgcagt
acctatgccgaggtgaagaaggatttgaagggacgttaccccaagcattactggccggat
gaccccctggtggccgaagcgaccgccaggatcaaaccccgaaagtag
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