Pseudomonas orientalis: BOP93_23725
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Entry
BOP93_23725 CDS
T05323
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
poi
Pseudomonas orientalis
Pathway
poi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BOP93_23725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poi03021
]
BOP93_23725
Transcription machinery [BR:
poi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BOP93_23725
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AUZ48474
UniProt:
A0A2L0S3A5
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All DBs
Position
5406833..5408683
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
IPPPVDPKAPKADDETEDDDAEASSDEEDEVESGPDPVIAAQRFGAVSDQMEITRKALKK
HGRGNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRTDFLRQFPGNEVDETWSDALAKGKAKYAEAIGRLQPDIIRCQQKLSALEAETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacccttggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcctgaggatatttcagatcct
gagcaggtggaagacatcatccgcatgattaatgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgacgccgataccgacgaggcagccgctgaa
gaagccgctgccgcgttggctgcggtggagaccgacatcggtcgcacgactgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagttgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgcgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccacattctctccgagtacactcgcgtcaccaccgaaggtggccgcctg
tccgacgtcctgagcggttatatcgacccggacgacggcattgcgccacctgccgccgaa
ataccgccgccggtagatccaaaagcgccgaaagcggacgacgaaaccgaagacgacgat
gctgaagccagcagcgacgaagaagatgaagtcgaaagcggtccagacccggtcatcgct
gcccagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggcgctgaaaaag
catggtcgtggcaacaagcaggcgattgccgagctgttggccctggccgagctgttcatg
ccgatcaagctggtgcccaagcaattcgaaggcctggttgaacgggttcgtagcgccctt
gagcgtctgcgtgcacaagagcgtgcgatcatgcagctctgtgtccgtgatgcgcgcatg
ccgcgtaccgacttcctgcgccagttcccgggcaacgaagttgacgaaacctggagtgac
gccctggccaaaggcaaggcgaaatacgccgaagccattggtcgcctgcagccggacatc
atccgttgccagcagaaactgagcgcactggaggctgaaacaggcctgacgatcgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgc
ggcctgcaattcctcgacctgattcaggaaggcaacatcggcctgatgaaggctgtggac
aagttcgaataccgtcgtggctacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagaccatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgactccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaacgccgattggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgcccatcgatgtcgccactgtt
gaaagcttgaaagaagcgactcgcgacgtactctccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagttcgacgtgacccgtgaacggatccgtcagatcgaagccaaggcgctgcgcaag
ttgcgtcacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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