Metapseudomonas otitidis: PtoMrB4_01270
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Entry
PtoMrB4_01270 CDS
T06890
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PtoMrB4_01270 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_01270 (recB)
Enzymes [BR:
poj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PtoMrB4_01270 (recB)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PtoMrB4_01270 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
ResIII
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCA26150
UniProt:
A0A679GEW7
LinkDB
All DBs
Position
128497..132036
Genome browser
AA seq
1179 aa
AA seq
DB search
MSLDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLGVGQILVVTYTTAATAELR
ERIRARLAALLAMYEGAPAPDPVLAGLHARYPGEDAHRRLLLAVHGFDEAAIFTIHGFCQ
RALQDAAFEAGGDFDSELAADDRDVLDALLADLWRAELAAAEPAWARFLAQKRLTPASLR
QRLRGHLGKPYLRIEPRDAAPGDLAPACDAWEHARSLWLRDATSCLAELAAFDGLNKRSY
DAAKFALWHSELDAYFADPAALFAPPAGLEKLAREALAKGCKKGFDLPDYPLCSALQGLV
DALEAAKPAGEARLIALQVRLLDTLNRELPQRKAAQRLLAFDDLLNRLDEALQGEAGDAL
AAALRERYPVALIDEFQDTDPVQYAIFRRVYPGGEAGGDLCFVGDPKQAIYAFRGADLAT
YLKARDEAARQYSLATNHRSVPRLIAALNRVFDRPRPFAEPGLDYPPVGASDKPRPQLVL
PEGGAPLELVWLGDEPLGKGEAGRAVAIDTARRIAALLAASAAGQAYFEADGVRTPLRGG
DFAVLVASHRQAGDVAAELATRGVPSVRRGRDSVWHSEEAAELAAVLAAYAEPGREGVLR
YALSTRLLGRDAQALARCQDDEHAWDEERERAERYHQLWQQHGFMRAFRAWLDEQAVAER
LIALPDGERRLTNLLHLAELLQAESLLRPGLEPLLAWFIAQCQAESHGDDALLRLESDAE
RVQIVTVHTSKGLEYPLVFCPYLWDGALLRRDEDITCHAEDGTPLLDLGGPELEAHRERA
RRERFAERLRLAYVALTRPRDRLWLHWGPVAVPKPKKDGGLPDDGLHTSALAWLLHGRTL
PGDAPLDELAGHLAALEGPGLRQELEALAADSAGDIAVVPLREAEASAQGEHRAPPPTAL
AQLQRTLHSAWRVGSFSGLAAGMHMEAPDRDAFFVPPATDPGSGFHAFPRGARAGTCLHA
ILEDWVRGEGELAALVDTHLKGHGLPLEWAETATLHLRQVLDTGLDGAGLTLAGLDPARR
LPELGFTFPVRQLDLHGLRAVLADPAHGLPAPMRAAAERLEFDTLNGFMKGFIDLTFEHR
GRWYIADYKSNWLGPDASYYGGERLEQAIAAEHYHLQYLIYLVALRRFLRQRLDGFGPDG
LGGAYYLFLRGMPDAGVYFHRPDDALLDALDRLFEEGHP
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgacctgctcgactcccccttcgacggccgcagcctgatcgaggccagcgcc
ggcaccggcaagacctggaccctgaccgcgctctacgcccgcctgctgctggagcgccag
ctcggcgtcgggcagatcctggtggtcacctacaccaccgccgccaccgccgagctgcgc
gagcgcatccgcgcgcgcctggcggcgctgctggccatgtacgagggcgccccggcgccg
gacccggtgctggccgggctgcatgcccgctacccgggcgaggacgcccaccgccgcctg
ctgctggcggtgcacggtttcgacgaggcggccatcttcaccatccacggcttctgccag
cgcgccctgcaggacgcggccttcgaggccggcggggatttcgacagcgaactggcggcc
gacgaccgcgatgtgctggacgccctgctcgccgacctctggcgtgccgaactggccgcc
gccgagccggcctgggcgcgcttcctggcgcagaagcgactgaccccggccagcctgcgc
cagcgcctgcgcgggcacctgggcaagccctacctgcgcatcgagccccgtgacgccgcc
ccgggcgacctggccccggcctgcgacgcctgggaacacgcccgcagcctgtggctgcgc
gacgcgaccagctgcctggccgagctggcggccttcgacgggctcaacaagcgcagctac
gacgcggccaagttcgccctctggcacagcgaactggacgcctacttcgccgatccggcg
gcgctcttcgccccgccggcaggcctggagaagctcgcccgcgaggcgctggccaagggc
tgcaagaagggtttcgacctgccggattacccgctctgctcggccctgcaaggcctggtg
gacgcgctggaggcggccaagccggccggcgaggcacggctgatcgccctgcaggtgcgc
ctgctcgacaccctcaatcgcgagctgccccagcgcaaggcggcccagcgcctgctggcc
ttcgacgacctgctcaaccgcctcgacgaggcgctgcagggcgaggccggcgacgccctg
gccgccgccctgcgcgagcgctacccggtggcgctgatcgacgaattccaggacaccgac
ccggtgcagtacgccatcttccgccgcgtctacccgggcggcgaagccgggggcgacctg
tgcttcgtcggtgaccccaagcaggccatctacgccttccgtggcgcggacctggccacc
tacctcaaggcccgcgacgaggccgcccggcagtacagcctggccaccaaccaccgctcc
gtgccacgcctgatcgccgcgctgaaccgggtcttcgaccgcccccgcccgttcgctgag
ccggggctggactacccgccggtgggcgccagcgacaagccgcgcccgcagctggtgctg
cccgagggcggtgccccgctggaactggtgtggctgggggacgagcccctcggcaagggc
gaggccggccgcgcggtggccatcgacaccgcccgccgcatcgccgctttgctggccgcc
agcgccgccggccaggcctacttcgaggccgacggcgtgcgcaccccgctgcgcggcggc
gacttcgccgtgctggtggccagccaccgccaggccggcgacgtggccgccgagctggcc
acccgtggcgtgcccagcgtgcgccgtggccgcgacagcgtctggcacagcgaagaggcc
gccgaactggccgccgtgctcgccgcctacgccgagccggggcgcgagggcgtgctgcgc
tatgccctctccacccggctgctgggccgcgacgcccaggccctggcccgctgccaggac
gacgagcacgcctgggacgaggaacgcgaacgcgccgagcgctaccaccagctgtggcag
cagcacggcttcatgcgcgccttccgcgcctggctcgatgagcaggcggtggccgagcgg
ctgatcgccctgcccgacggtgagcggcgcctgaccaacctgctgcacctggccgaactg
ctgcaggccgagagcctgttgcgccccggcctggagccgctgctggcctggttcatcgcc
cagtgccaggccgagagccacggcgacgacgccctgctgcgcctggaaagcgatgccgag
cgggtgcagatcgtcaccgtgcacacctccaagggcctggaatacccgctggtgttctgc
ccctacctgtgggacggcgcgctgctgcgccgggacgaagacatcacctgccacgccgag
gacggcaccccgctactggacctgggcggccccgagctggaggcccaccgcgagcgcgcc
cgccgcgagcgcttcgccgaacgcctgcgcctggcctacgtggccctcacccgcccccgc
gaccgcctctggctgcactggggcccggtggcggtgcccaagccgaagaaggacggcggc
ctgcccgatgacgggctgcacaccagcgccctggcctggctgctgcacggccgcaccctg
cccggcgacgcgcccctggacgaactggccggccacctggcggccctggaaggccccggc
ctgcgccaggagctggaggccctggccgccgacagcgcgggcgacatcgccgtggtgccc
ctgcgcgaggccgaggccagcgcccagggcgagcaccgcgccccgccgccgacggccctg
gcacagctgcagcgcaccctgcacagcgcctggcgggtcggcagcttctccggcctggcg
gccggcatgcacatggaggcgccggaccgcgacgccttcttcgtgccgccggccaccgac
ccgggcagcggcttccacgccttcccgcgcggcgcccgggccggcacctgcctgcacgcc
atcctcgaggactgggtgcgcggcgagggcgagctggccgcgctggtggacacccacctc
aagggccacggcctgccgctggaatgggccgagaccgcgaccctgcacctgcgccaggtg
ctggacaccggcctcgacggcgccggcctgaccctggccgggctcgacccggcgcggcgc
ctgccggaactgggcttcaccttcccggtgcgtcagctcgacctgcacggcctgcgcgcg
gtgctggcggacccggcccacggcctgccggcgcccatgcgcgcggcggccgagcgcctg
gagttcgacaccctcaacggcttcatgaagggcttcatcgacctcaccttcgaacaccgg
gggcgctggtacatcgccgactacaagtccaactggctggggcccgacgccagctactac
ggcggcgaacgcctggagcaggccatcgccgccgagcactaccacctgcagtacctgatc
tacctggtggcgctgcggcgcttcctgcgccagcgcctggacggcttcggcccggacggg
ctgggcggcgcctactacctgttcctgcgcggcatgcccgacgccggggtgtacttccac
cgcccggacgacgcgctgctggacgcgctggaccggctgttcgaggagggccacccgtga
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