Metapseudomonas otitidis: PtoMrB4_05880
Help
Entry
PtoMrB4_05880 CDS
T06890
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
poj
Metapseudomonas otitidis
Pathway
poj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PtoMrB4_05880 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poj03021
]
PtoMrB4_05880 (rpoD)
Transcription machinery [BR:
poj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PtoMrB4_05880 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GBP_C
TMPIT
Motif
Other DBs
NCBI-ProteinID:
BCA26611
UniProt:
A0A1I0SQR1
LinkDB
All DBs
Position
complement(627051..628904)
Genome browser
AA seq
617 aa
AA seq
DB search
MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGAVDSILAEYQRVTTEGGRLSDVLSGYIDPDDGSLPAEEV
EPVELKSDSAAKAKDEDEEDEESESDDTEEEGDGGPDPEEALRRFTAVSDQLEKARKALK
KHGRDSKQATEELQALAELFMPIKLVPKQFDALVERVRGALDRVRGQERAIMQLCVRDAR
MPRADFLRLFPGNEVDLTWAEDIAKGKAKYAEAIGKLLDDIKRNQQKLVDLEKEVDLKVA
EIKDVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVAT
VESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcctcaaagagttgatcgcccgcggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggacgccctgttgctggccgaggccgacaccgacgaagccgcagcggaa
gaagccgcagccgctctcgccgcggtggagaccgacatcggccgcaccaccgacccggtc
cgcatgtacatgcgcgaaatgggcacggtcgagttgctcacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgccatcgcccacttcccg
ggcgccgtggacagcatcctcgccgaataccagcgcgtcaccaccgaaggtggccgcctc
tccgacgtcctcagtggctacatcgaccccgacgatggcagcctgccggccgaggaagtc
gagcctgtcgaactgaaaagcgacagcgccgccaaagccaaggatgaagacgaagaagac
gaagaaagcgaatccgacgacaccgaggaagaaggtgacggcggtccggacccggaagag
gccctgcgccgcttcaccgcggtatccgaccagctcgagaaggcccgcaaggctctcaag
aagcacggccgcgacagcaagcaggccaccgaggagctgcaagccctcgccgaactgttc
atgcctatcaagctcgtgcccaagcagttcgacgccctggtcgagcgcgtccgtggcgcc
ctggaccgcgtccgtggccaggagcgcgccatcatgcagctgtgcgtccgtgacgcccgc
atgccgcgcgccgacttcctgcgcctgttccccggcaacgaagtcgacctgacttgggcc
gaagacatcgccaagggcaaggccaagtacgccgaagccatcggcaagctgctggacgac
atcaagcgcaaccagcagaagctggtggacctcgagaaggaagtcgacctcaaggtcgcc
gagatcaaggacgtcaaccgtcgcatgtccatcggcgaagccaaggcccgccgtgccaag
aaagagatggtcgaggccaacctgcgtctcgtgatctccatcgccaagaagtacaccaac
cgtggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggccgtg
gacaagttcgaataccgccgcggctacaagttctcgacctacgccacctggtggatccgc
caggcgatcacccgctcgatcgccgaccaggcccgcaccatccgtatcccggtgcacatg
atcgagaccatcaacaagctcaaccgcatctcccgccagatgctccaggaaatgggccgc
gagcccactccggaagaactcggcgagcgcatggagatgcccgaggacaagatccgcaag
gtcctgaagatcgccaaagagccgatctccatggaaaccccgattggtgacgacgaagat
tcgcacctgggtgacttcatcgaggacagcaccatgcagtccccgatcgacgtcgccacg
gtcgaaagcctcaaggaagccactcgcgaagtcctcgccggcctcactgcccgtgaagcc
aaggtcctgcgcatgcgtttcggtatcgacatgaacaccgaccacaccctcgaggaagtg
ggcaagcagttcgacgtcacccgcgaacgtatccgccagatcgaagccaaggcactgcgc
aagctgcgccacccgtcgcgaagcgagcatctgcgctccttcctcgacgagtaa
DBGET
integrated database retrieval system
