Metapseudomonas otitidis: PtoMrB4_06860
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Entry
PtoMrB4_06860 CDS
T06890
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PtoMrB4_06860 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poj03021
]
PtoMrB4_06860 (rpoA)
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_06860 (rpoA)
Enzymes [BR:
poj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PtoMrB4_06860 (rpoA)
Transcription machinery [BR:
poj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PtoMrB4_06860 (rpoA)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PtoMrB4_06860 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
BCA26709
LinkDB
All DBs
Position
723254..724255
Genome browser
AA seq
333 aa
AA seq
DB search
MQSSVNEFLTPRHIDVQAVSTTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAVKLHGRDEVTLNLVKKGPGVVTAADIQLDHD
VEIVNGDHVIANLADNGSLNMKLKVARGRGYEPADARQSDEDESRSIGRLQLDASFSPVR
RVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagagttcggtaaatgagttcctgacccctcgccacatcgatgtgcaagcggtcagc
acgacccgcgccaagatcacgctcgagcctctcgagcgtggcttcggccataccctgggc
aacgcgctgcgtcgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgaa
atcgacggcgtactccatgagtacagcgccatcgaaggtgttcaggaagacgtcattgaa
atcctgctcaacctgaaaggtctggctgtcaaactgcacggccgtgacgaagtaacgctg
aacctggtcaagaaaggcccgggcgttgtcactgctgccgatattcagctggatcatgat
gtcgagatcgtcaacggtgaccacgtcatcgccaacctggcggacaacggctcgctgaac
atgaagctgaaagtggctcgcggccgtgggtacgaacccgctgacgcgcgccagagcgac
gaagacgagagccgtagcattggccgtctccagctcgacgcttccttcagcccggtccgt
cgcgttgcgtacgtcgtggaaaacgcccgtgtcgagcagcgcaccaacctggacaagctg
gtcatcgacctggaaaccaacggcaccctggatcccgaagaggctatccgtcgcgccgct
accatcctgcaacagcagctggcagcgttcgtggacctcaaaggtgacagcgagcccgtg
gtcgtggaacaggaagacgagatcgatccgatcctcctgcgccccgtcgacgaccttgag
ctgaccgtgcgttcggccaactgcctgaaggcggagaacatctactacatcggcgacctg
attcagcgtaccgaagtagagctgctcaagactccgaacctgggcaagaagtccctgacc
gagatcaaggacgtcctggcctcccgtggtctgtccctcggcatgcgcctcgacaactgg
ccgccggcaagtcttaagaaggacgacaaggcgactgcctga
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