Metapseudomonas otitidis: PtoMrB4_09820
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Entry
PtoMrB4_09820 CDS
T06890
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtoMrB4_09820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poj03019
]
PtoMrB4_09820
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PtoMrB4_09820
Messenger RNA biogenesis [BR:
poj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PtoMrB4_09820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
BCA27005
UniProt:
A0A1I0UQT1
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All DBs
Position
1040732..1042048
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AA seq
438 aa
AA seq
DB search
MTFASLGLIEPLLRALDGLGYQTPSPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL
QKLTQEGPQVAANSVRALVLVPTRELAEQVHQSLQAYGQHLPLRTYAVYGGVSINPQMMK
LRKGIDLLVATPGRLLDLYRQNAVKFSQLQALVLDEADRMLDLGFARELDELFVALPRRR
QTLLFSATFSDAIRQMARHLLRDPLSIEVSPRNAAARSVRQWLVPVDKKRKTELFLHLLE
QHRWRQVLVFAKTRKGVDQLVEVLHARGIAADSIHGDKPQPSRLRALERFKAGEVDVLVA
TDVAARGLDIHDLPQVVNLDLPIVAEDYVHRIGRTGRAGATGEAVSLVCADEVELLSAIE
VLIRQTLERREEPGFEPDHRVPVTDASGAILKKPKKPKKPKEPAAGGKPARLGNWIDSEK
PKVKAVRKSPGFSRGKKG
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgcatcccttggcctgatcgaacccctgctgcgcgccctcgacgggctcggc
taccagaccccttcaccggtccaggccgaggcgatacccgccgtgctcaaggggcgcgac
ctgatggccgcggcccagaccggcaccggcaagaccgccggcttcgccctgccgctgctg
cagaagctcacccaggaaggcccccaggtggcggccaactcggtgcgcgccctggtgctg
gtgcccacccgcgagctggccgagcaggtccaccagagcctccaggcctacggccagcac
ctgcccctgcgcacctacgcggtgtacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcatcgacctgctggtggccaccccgggccgcctgctcgacctgtaccgg
cagaacgcggtgaagttcagccagctgcaggcgctggtgctggacgaggccgaccgcatg
ctcgacctgggcttcgcccgtgagctggacgaactcttcgtcgccctgccgcgccgccgg
cagaccctgctgttctccgccaccttctccgacgccatccgccagatggcccgccacctg
ctgcgcgacccgctgagcatcgaggtcagcccgcgcaacgcggcggcccgcagtgtgcgc
cagtggctggtgccggtggacaagaagcgcaagaccgaactcttcctgcacttgctggag
cagcaccgctggcgccaggtgctggtgttcgccaagacccgcaagggcgtcgaccaactg
gtggaggtgctgcacgcgcgcggcatcgccgccgattcgatccacggcgacaagccccag
ccctcgcgcctgcgggccctggagcggttcaaggccggggaggtggacgtgctggtggcc
accgacgtggcggcccgtggcctggatatccacgacctgccccaggtggtgaacctggac
ctgcccatcgtcgccgaggactacgtccaccgcatcggccgtaccgggcgtgccggggcc
accggtgaggcggtgtcgctggtgtgcgccgacgaggtggagctgctctcggccatcgag
gtgctgatccgccagaccctggagcgccgcgaggagccagggttcgagccggaccaccgg
gtgccggtcaccgacgccagcggcgccatcctgaagaagccgaagaaacccaagaagccc
aaggagccggcggccggtggcaagcccgcgcgcctgggcaactggatcgacagcgagaag
cccaaggtcaaggcggtgcgcaagagccccggcttctcccgtggcaagaagggctga
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