Metapseudomonas otitidis: PtoMrB4_17410
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Entry
PtoMrB4_17410 CDS
T06890
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PtoMrB4_17410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_17410 (mfd)
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PtoMrB4_17410 (mfd)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PtoMrB4_17410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
ERCC3_RAD25_C
AAA_30
DUF7267
Motif
Other DBs
NCBI-ProteinID:
BCA27764
UniProt:
A0A679GP02
LinkDB
All DBs
Position
complement(1859611..1863063)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPASVLRLPTLPTASGKQQWGNLNGAALGLAIAEAASTARRFTLLLTADSQSAERLEQEL
GFFAPDLPVLHFPDWETLPYDLFSPHQDIISQRVASLYRLPELDHGVLVVPITTALHRLP
PRRFLLGSSLVLDVGQKLDVEQMRLRLEGAGYRCVETVYEHGEFAVRGALIDLFPMGSDL
PYRIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLDKKAVTDFRGRFRECFDVD
FRRCPIYQDLASGITPAGIEYYLPLFFEETETLFDYLPGNTQVFSLPGIEQAAEQFWSDV
RSRYEERRVDPERPLVPPAELFLPVEDCFARLKASPRVVADPSDLAPGVGRERFPTRALP
DLAIEGKASEPLAALRRFLEEFPGRVLFSAESAGRREVLLELLARLKLRPQEVAGWPEFV
ASSERLAITIAPLDEGLLLDEPALALVAESPLFGQRVMQRRRRERRSDGGDNVIKNLAEL
REGAPVVHIDHGVGRYLGLITLEIEGQAAEFLALQYAEEAKLYVPVASLHLIARYTGTDD
ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFKDPLADYATFSAGF
PFEETPDQQAAIEAVVADMLAPKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVRVEVMSRFKTAKEVEGAANELAEGKVDIVIGTHRLLQGD
IRFKQLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIA
TPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNEVKTIEKCAADLAELVPEAR
IGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGE
LLGEGQSGQIQAVGFTLYMEMLERAVKSIQKGEQPNLEQPLGGGPEINLRVPALIPEDYL
PDVHARLILYKRIASAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIKK
VDAGPQGGRIEFAADTCVDPLVLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEA
LFERLVPQSA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgcctccgtcctgcgtctcccgaccctccccaccgccagcggcaagcagcagtgg
ggcaacctcaacggtgcggccctcggcctggccatcgccgaagcggcgagcactgcccga
cgcttcaccctgttgctgaccgccgacagccagagcgccgaacgcctggagcaggaactg
ggcttcttcgccccggacctgccggtgctgcacttcccggactgggaaacgctgccctac
gacctgttctccccccaccaggacatcatttcccagcgggtggccagcctctatcgcctg
ccggaactggaccatggcgtgctggtggtgccgatcaccaccgccctgcaccgcctgccg
ccccggcgcttcctgctgggttcaagcctggtgttggacgtgggccagaagctggacgtg
gagcagatgcgcctgcgcctggaaggggccggctaccgctgcgtggaaacggtctacgag
cacggcgagttcgccgtgcgcggcgcgctgatcgacctgttccccatgggcagcgacctg
ccctaccgcatcgacctgttcgatgacgagatcgagaccctgcgcaccttcgacccggaa
acccagcgctcggtggacaaggtggaatcgatccgcctgctgccggcccgcgagttcccg
ctggacaagaaggcggtcaccgacttccgcggccgcttccgcgagtgcttcgacgtcgac
ttccgccgctgcccgatctaccaggacctggccagcggcatcaccccggccggcatcgag
tactacctgccgctgttcttcgaggagaccgagacgctcttcgactacctgcccggcaac
acccaggtgttctccctgcccggcatcgaacaggccgccgagcagttctggagcgacgtg
cgcagccgctatgaagagcgccgcgtcgaccccgagcgcccgctggtgccgccggccgaa
ctgttcctgccggtggaggactgcttcgcccggctgaaggcctcaccccgcgtggtggcc
gaccccagcgacctggcgcccggcgtgggccgcgagcgcttccccacccgcgccctgccc
gacctcgccatcgaaggcaaggccagcgagccgctggcggccctgcgccgcttcctggag
gagttccccggccgcgtgctgttcagcgccgaatcggccggccgccgcgaagtgctgctg
gaactgctcgcccggctcaagctacgcccgcaggaagtcgccggctggccggagttcgtc
gccagcagcgagcgcctggccatcaccatcgccccgctggacgagggcctgctgctggac
gaaccggccctggcgctggtcgccgaaagcccactgttcggccagcgcgtcatgcagcgc
cgtcgccgcgaacgccgcagcgacggtggcgacaacgtcatcaagaacctcgccgagctg
cgcgaaggcgcaccggtggtgcacatcgaccacggcgtgggccgctacctcggcctgatc
accctggagatcgaaggccaggccgccgaattcctcgccctgcagtacgccgaggaagcc
aagctctacgtgccggtcgccagcctgcacctgatcgcccgctacaccggcaccgatgac
gccctggcaccgctgcaccgcctgggctcggaaacctggcagaaggccaagcgcaaggcc
gccgaacaggtgcgcgacgtcgccgccgagctgctggacatctacgcccgccgcgccgcg
cgaaaaggctatgccttcaaggacccgctggccgactacgccaccttctccgccggcttc
cccttcgaggaaaccccggaccaacaggccgccatcgaggccgtggtcgccgacatgctg
gcgcccaagccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtg
gccatgcgcgcggccttcgtcgccgtgcacagcggcaagcaggtggcggtgctggtgccc
accaccctcctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgcgcgtggaggtgatgagccgcttcaagaccgccaaggaagtggaaggcgccgccaac
gagctggccgaaggcaaggtggacatcgtcatcggcacccaccgcctgctgcagggcgac
atccgcttcaagcagctgggcctggtgatcatcgacgaggaacaccgcttcggcgtgcgc
cagaaggagcagctcaaggccctgcgcagcgaggtggacatcctcaccctcaccgccacg
ccgatcccgcgcaccctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgcc
accccgccggcgcgccgcctgtcggtgcgcaccttcgtgatggaacagcagaacacggtg
atcaaggaggccctgctgcgcgagctgctacggggcgggcaggtctactacctgcacaac
gaggtcaagaccatcgagaagtgcgccgccgacctcgccgaactggtgcccgaggcccgt
atcggcatcggccacgggcagatgcacgagcgcgagctcgaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctggtggcctccaccatcatcgagaccggcatcgacgtg
cccagcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagttgcac
cagctgcgtggccgcgtcggccgcagccaccaccaggcctacgcctacctgctgacgcca
ccgcgcaagcagatgaccgaggacgcccagaagcgcctggaagccatcgccaacgcccag
gacctgggggccggcttcgtgctggccacccatgacctggagatccgcggcgccggtgag
ctgctgggcgagggccagagcgggcagatccaggccgtgggcttcaccctctacatggaa
atgctcgaacgcgcggtcaaatccatccagaagggcgagcaacccaacctggagcagccc
ctgggcggcgggccggaaatcaacctgcgggtgccggcactgattcccgaggactacctg
cccgacgtgcacgcacggctgatcctctacaagcgcatcgcctcggccgccgacgaggac
ggcctgaaggagctgcaggtggaaatgatcgaccgcttcggcctgctccccgagcccacc
aagaatctggtgcgcctcaccctgctcaagctgcaggcggagaagctcggcatcaagaaa
gtcgacgccggcccccaaggtggtcggatagaattcgccgccgacacctgcgtcgacccg
ctggtgctgatcaagctgatccagggccagcccaagcgctacaaattcgaaggcgccacc
cagttccgcttcctggtcccgatggagcgaccggaagaacgcttcaacacactggaggcg
ctgttcgagcgcctcgttccgcaatccgcttaa
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