Metapseudomonas otitidis: PtoMrB4_19900
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Entry
PtoMrB4_19900 CDS
T06890
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtoMrB4_19900 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poj03019
]
PtoMrB4_19900 (deaD)
03009 Ribosome biogenesis [BR:
poj03009
]
PtoMrB4_19900 (deaD)
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PtoMrB4_19900 (deaD)
Messenger RNA biogenesis [BR:
poj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PtoMrB4_19900 (deaD)
Ribosome biogenesis [BR:
poj03009
]
Prokaryotic type
rRNA helicases
PtoMrB4_19900 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
Motif
Other DBs
NCBI-ProteinID:
BCA28013
UniProt:
A0A1I0SVM2
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All DBs
Position
2143738..2145414
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AA seq
558 aa
AA seq
DB search
MTQDIGGFAALGLHPNVLAAIAAVGYEEPSPIQAQSIPVILAGHDMIGQAQTGTGKTAAF
ALPILSRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGLNVVAVYGGAPMGPQLK
ALRQGAQVIVATPGRLCDHLRRDEKMLATVQQMVLDEADEMLKLGFMEDLEVIFEALPES
RQSVLFSATLPPSIRSIAERHLKEPQHVKIAAKTQTVARIEQAHLMVHADQKVGAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVVNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEVRLPTAPQVLDARIRKLTNSLAPLVADAEASHGELLDRLIADIGCSPRAL
AAALLRKATNGQSLNLADVEREQPLVPGAPQPRERRERDGERGERGEYRERRAPLPVGEG
RVRCRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLIELPEEGLDRLLGKL
KDTRVAGKSLKLRRYRED
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggatatcggcggattcgccgcgctcggccttcaccccaatgttctcgctgcc
atcgctgcagtgggctacgaagagccttcccccatccaggcccagtcgattccggtgatc
ctcgccgggcacgacatgatcggccaggcccagaccggtaccggcaagactgcagccttc
gcgctgccgatcctttcccgtatcgatccggccaaacgtgagccgcaggcgctgatcctg
gcaccgacccgcgagctcgcactgcaagtcgccaccgctttcgaaacctacgccaagcag
atgcccggcctgaacgtcgtggccgtctacggcggcgcgcccatgggcccgcagctcaag
gccctgcgccagggcgcccaggtgatcgtggccacccccggccgcctgtgcgaccacctg
cgccgtgacgagaagatgctcgccaccgtgcagcagatggtgctggacgaagcggacgag
atgctcaagctcggcttcatggaagacctcgaagtgatcttcgaggccctgccggaaagc
cgtcagagtgtgctgttctccgccaccctgccgccgtcgatccgttcgatcgccgagcgt
cacctgaaagagccgcagcacgtcaagatcgctgccaagacccagaccgtggcccgcatc
gagcaggcccacctgatggtccacgccgaccagaaggtcggtgccgtgctgcgcctgctg
gaagtcgaggagttcgacgcgctgatcgccttcgtgcgcaccaagcaggccaccctggac
ctggcctccgccctggaagccaagggctacaaggccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgagtccctcaaggacggtcgcctggacatcgtcgtc
gccaccgacgtcgccgcccgcggcatcgacgtaccgcgcatcacccacgtggtgaacgtg
gacatgccgtacgaccccgagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgtgaaggccgtgccctgctgctggtcaccccgcgcgagcgccgcatgctgcaggtgatc
gagcgcgtgaccaaccagaaggtcgccgaagtccgcctgcccaccgcgccccaggtactg
gatgcacggatccggaagctgaccaacagcctggcccccctggtggccgacgccgaggcc
agccatggcgaactgctcgaccgcctgatcgccgacatcggctgcagcccgcgtgccctg
gccgctgcgctgctgcgcaaggccaccaacggccagtcgctgaacctggcggacgtggag
cgcgagcagccgctggtgccgggtgctccccagccccgcgagcgccgtgagcgtgacggt
gagcgtggcgagcgcggtgaataccgcgagcgtcgtgcgccgctgccggtcggcgaaggc
cgcgtgcgttgccgcaccgccctggggactcgcgacggcatcgccgcgaagaacctgctg
ggcgccatcctcaacgagggtggtctggcgcgcgaagccatcggtcgtatccagatccgc
gagaccttcagcctgatcgagctgcccgaagagggccttgatcgcctgctgggcaagctg
aaggacacccgcgtggcgggcaagtcgctgaagctgcgtcgctaccgcgaagactga
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