Metapseudomonas otitidis: PtoMrB4_20380
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Entry
PtoMrB4_20380 CDS
T06890
Name
(GenBank) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PtoMrB4_20380
09124 Replication and repair
03420 Nucleotide excision repair
PtoMrB4_20380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poj03021
]
PtoMrB4_20380
03036 Chromosome and associated proteins [BR:
poj03036
]
PtoMrB4_20380
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_20380
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PtoMrB4_20380
Transcription machinery [BR:
poj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PtoMrB4_20380
Chromosome and associated proteins [BR:
poj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PtoMrB4_20380
DNA repair and recombination proteins [BR:
poj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PtoMrB4_20380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
BCA28061
UniProt:
A0A679GB66
LinkDB
All DBs
Position
complement(2223858..2226164)
Genome browser
AA seq
768 aa
AA seq
DB search
MTYRVAVRALCEFTAKRGDLDLRFTPSPTAQEGIAGHALVAARRGDGYQREVPLAGAFGP
LQVRGRADGYDPAGNRLEEVKTHRGDLARQPDNHRHLHWAQVRVYGWLLCAERGLDEVEL
ALVYLDVASQKETTFTTRASAAELQAFFEAQCQAFLAWAEQELAHQARRDGALQALRFPH
ASFRLGQRELAEAVYKAASTGCCLMTQAPTGIGKTLATLFPQLKALGGGRLERLFFLAAK
TPGRQLALHSLATLRDSVDALPVRVLELTARDKACEHPGSACHGDACPLARGFYDRLPAA
REAAAERCWLDRAALREVALAHNVCPYYLGQEMARWSDVVVGDYNYYFDLGALLFGLAQL
NQWQVGVLVDEAHNLVERARAMYSAELRQGALKALVRSVPGPLKKPLERVQRSWSELNKA
QLVDYQAYDEPPQKLLGALQNAVTAITDHLAEQPGAPLDPALMTFYFDALHFTRMAELFD
THSLFDLNTYGSGRNRQSTLCLRNLVPAPFIGPRLEASRSTVLFSATLNPRRYYSDLLGV
PSNTPWLEVQSPFTAEQLQVRVAQRLSTRYQHRAQSLEPIVELMADQFYQRPGHYLAFFS
SYQYLEQVATLFAERHPFIPAWSQSRSMGEAERLAFLERFTEGGRGIGFAVLGGAFGEGI
DLPGERLIGAFIATLGLPQVNPVNEQLKQRMGAIFQAGYDYTYLYPGLQKVVQAAGRVIR
TQGDRGVVHLMDERFAQPEIRRLLPSWWRVEMHDATDTGQREGSACDG
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccgcgtggcggtgcgggccctgtgcgagttcaccgccaagcgcggcgacctc
gacctgcgcttcaccccctcccccacagcccaggaaggcatcgccggccacgccctggtg
gcggcccggcggggcgacggctaccagcgcgaagtccccctggccggcgcattcggcccg
ctgcaggtgcgcggccgcgccgacggctacgacccggcaggcaaccgcctggaagaggtg
aagacccaccgcggcgacctggcccgccagcccgacaaccaccgtcacctgcactgggcc
caggtgcgcgtctacggctggctgctgtgcgccgaacgcgggctggacgaggtggagctg
gccctggtctacctcgatgtcgccagccagaaggaaaccaccttcaccacccgcgccagc
gccgccgaactgcaggccttcttcgaggcccagtgccaggccttcctcgcctgggccgaa
caggagctggcccaccaggcccggcgcgacggtgccctgcaggccctgcgctttccccat
gccagcttccgcctcggccagcgggaactggccgaggcggtgtacaaggccgccagcacc
ggctgctgcctgatgacccaggcgcccaccggcatcggcaagaccctggccaccctgttc
ccccagctcaaggccctgggcggcgggcgcctggaacgcctgttcttcctcgccgccaag
acccccggccggcaactggccctgcacagcctggcgaccctgcgcgacagcgtggacgcg
ttgcccgtgcgggtgctggagctgaccgcccgcgacaaggcctgcgaacaccccggcagc
gcctgccacggcgacgcctgccccctggcacggggcttctacgaccgcctgccggctgcc
cgcgaggcggctgcggaacggtgctggctggaccgcgccgccctgcgcgaggtggccctg
gcccacaacgtctgcccctattacctgggccaggagatggcgcgctggagcgacgtcgtg
gtgggggactacaactactacttcgacctcggcgccctgctcttcggccttgcccagctc
aaccagtggcaggtgggcgtgctggtggacgaagcccacaacctggtggagcgcgcccgc
gccatgtacagcgccgagttgcgccagggcgcgctgaaggccctggtccgcagcgtgccc
ggcccgctgaagaagcccctggagcgggtgcagcgcagctggagcgagctgaacaaggcc
cagctggtggattaccaggcctacgacgaacccccgcagaagctgctgggcgcgctgcag
aacgcggtcaccgccatcaccgaccacctggcggaacaacccggcgcgccgctggacccg
gcgctgatgacgttctacttcgacgccctgcacttcacccgcatggccgaactcttcgac
acccattcgctgttcgacctgaacacctacggcagcggccgcaaccgccagtccaccctg
tgcctgcgcaacctggtgccggcccccttcatcggcccgcgcctggaagccagtcgctcc
accgtgctcttctccgccaccctcaacccgcgccgctactacagcgacctgctgggggtg
ccgagcaacacgccgtggctggaggtgcaatcccccttcaccgccgagcagctgcaggtg
cgggtggcccagcgcctctccacccgctaccagcaccgggcgcaatccctggagcccatc
gtcgaactgatggccgaccagttctaccagcgccccggccactacctggcgttcttcagc
agctaccagtacctggaacaggtggccacgctgttcgccgagcgccaccccttcatcccg
gcctggagccagtcgcggagcatgggcgaggccgagcgcctggcctttctcgaacgcttc
accgagggcgggcgcggcatcggcttcgccgtgctcggcggggccttcggcgaaggcatc
gacctgcccggcgagcgcctcatcggtgccttcatcgccaccctcggcctgccccaggtg
aacccggtgaacgagcagttgaagcagcgcatgggcgcgatcttccaggccggctacgac
tacacctacctctacccgggcctgcagaaagtggtgcaggccgccggccgggtgatccgc
acccagggcgaccggggcgtggtgcacctgatggacgaacgcttcgcccaacccgagatc
cgccggctgctgcccagctggtggcgggtggagatgcacgacgccacagacactggacag
cgggagggatcggcttgcgacggctga
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integrated database retrieval system
