Metapseudomonas otitidis: PtoMrB4_39110
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Entry
PtoMrB4_39110 CDS
T06890
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtoMrB4_39110 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poj03019
]
PtoMrB4_39110 (recQ)
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_39110 (recQ)
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PtoMrB4_39110 (recQ)
Messenger RNA biogenesis [BR:
poj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PtoMrB4_39110 (recQ)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PtoMrB4_39110 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
HTH_29
DUF433
HTH_23
HTH_69
PAX
GerE
HTH_7
Transposase_mut
Motif
Other DBs
NCBI-ProteinID:
BCA29934
UniProt:
A0A1I0U733
LinkDB
All DBs
Position
complement(4262075..4264201)
Genome browser
AA seq
708 aa
AA seq
DB search
MLDHALRILKDVFGYDAFRGNQAAIIERVARGGDALVLMPTGGGKSLCYQVPALMREGLA
VVVSPLIALMDDQVATLEELGVAAVALNSTLGADEQREIADRIRRGEIKLLYLAPERLVQ
PRMLAFLERLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPGVPRIALTATADRRT
REEIVQRLHLQEAERFLSSFDRPNIFYRIVPKDNPRKQLLGFLAERKGDAGIVYCLSRKK
VEEVAAFLSEQGFPALPYHAGLENELRAYHQRRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHK
LEAMLALCEETRCRRQALLAYFDEELPQPCGHCDICVDGVQTWDATEPARQALSAVYRSG
QRYGVGHLVDILLGRDNEKVRAAGHQHLSVFGVGKAFSETEWRTLFRQLVARGLADIDLE
GFGGLRLSEACRPLLRGEVTLQLRRDLSTKAPKPAASAASQLVRADEREQWEALRTLRRK
LAEEHSVPPYVIFPDATLLEMLRSRPSSLSDMARVSGVGARKLERYGQAFLEVLNGAEAE
APRAVADLRHELVSLARAGMTPAQIARQLQCTEKNVYALLAEAIAAQQLSLEQALDLPED
TLGEVQDAFLDGEGELPPVAEVAQLLGGRVPEGVLYCVRAALQAEFEA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccacgcgctgcgcatcctcaaagacgtattcggctacgacgccttccgcggc
aaccaggccgccatcatcgagcgcgtggcccgtggcggcgatgccctggtgctgatgccc
accgggggcggcaagtccctctgctaccaggtgccggcgctgatgcgcgagggcctggcg
gtggtggtttcgccgctgatcgcgctgatggacgaccaggtggcgaccctggaggagctg
ggcgtggcggcggtggcgctgaactccaccctcggcgcggacgagcagcgggagatcgcc
gaccgcatccgccggggcgagatcaagctgctctacctggcccccgagcgcctggtgcag
ccgcgcatgctggcgttcctggagcgtctggacatcgccctgttcgccatcgacgaggcc
cactgcgtgtcccagtggggccacgacttccgtcccgaatatctgcaactgggccagttg
gccgagctgtttcccggcgtgccgcgcattgcgctgaccgccaccgccgaccgccgcacc
cgcgaggagattgtccagcgcctgcacctgcaggaggcggagcgcttcctgtcgagcttc
gaccggccgaacatcttttaccgcatcgtgcccaaggacaatccgcgcaagcagttgctg
ggcttcctcgccgagcgcaagggcgatgccggcatcgtctactgcctgtcgcgcaagaag
gtggaggaggtggcggccttcctgtccgagcagggcttcccggcgctgccctaccacgcg
ggcctggagaacgagctgcgggcctaccaccagcggcgtttcctcaacgaggaggggctg
atcatggtggcgaccattgccttcggcatgggtatcgacaagcccaacgtgcgcttcgtg
gcccacatggacctgccgaaatccctggaggcgtactaccaggagaccggccgcgccggg
cgtgacggcctgccggcggacgcctggatggcctatgggctgcaggacgtgatcttcctc
aagcagatgctcaacaactccgagggcgacgagcggcacaagcgcatcgaacagcacaag
ctggaggcgatgctggcgctctgcgaggagacccgctgccgccgccaggcgctgctggcc
tacttcgacgaggagctgccgcagccctgcgggcactgcgacatctgcgtcgacggggtg
cagacctgggacgccaccgaaccggcccgccaggccctgtcggcggtctaccgcagcggc
cagcgctacggcgtcgggcacctggtggacatcctcctcgggcgcgacaacgagaaggtg
cgcgcggcgggccaccagcacctgtcggtgttcggcgtgggcaaggccttttccgagacg
gagtggcgcacgctgttccgccaattggtggcacgtggcctggccgacatcgacctcgaa
ggcttcggcgggttgcgcctgagcgaggcctgtcggccgctgctgcgcggcgaggtgacc
ctgcagctgcgccgcgacctgtccaccaaggcgcccaagccggccgccagcgcggccagc
cagctggtgcgtgccgacgagcgcgagcagtgggaggcgctgcgtacgctgcgccgcaag
ctggcggaggagcacagcgtgccgccctacgtcatcttccccgacgcgaccctgctggag
atgctgcgcagccggccgtcgagcctgtcggacatggcgcgggtcagcggcgtgggcgca
cgcaagctggagcgctacggccaggccttcctcgaggtgctcaatggcgccgaagccgag
gcgccccgcgccgtggcggacctgcgccacgagctggtcagcctggcccgtgccggtatg
accccggcgcagatcgcccgccagctgcaatgcaccgagaagaacgtctatgcgctgctg
gccgaagccatcgccgcgcaacagctcagcctggagcaggcgctggacctgcccgaggac
accctcggcgaggtgcaggacgccttcctcgacggcgagggcgagctgccaccggtggcc
gaagtggcccaactgttgggcggccgggtgccggaaggcgtgctgtattgcgtgcgtgcg
gcgctgcaggcggagttcgaggcctga
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integrated database retrieval system
