Metapseudomonas otitidis: PtoMrB4_42890
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Entry
PtoMrB4_42890 CDS
T06890
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
poj
Metapseudomonas otitidis
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
poj03009
]
PtoMrB4_42890 (rlmD)
Enzymes [BR:
poj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PtoMrB4_42890 (rlmD)
Ribosome biogenesis [BR:
poj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PtoMrB4_42890 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Cons_hypoth95
Methyltransf_11
Methyltr_RsmB-F
Methyltrans_SAM
PCMT
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_23
UPF0020
Methyltransf_12
Archaeal_AmoA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
BCA30312
UniProt:
A0A679GLI5
LinkDB
All DBs
Position
complement(4653112..4654470)
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AA seq
452 aa
AA seq
DB search
MSKRNGGLRFQSGGGKRQAAPAVPVGKKQTLEVERLAHDGRGIAFEQGRTWFVDGALPGE
SVEARVLGARSQVVEARAERILRASPERRAEPCPHARQCGGCSLQHLPHEAQLALKQRTL
AEQLERFAGLVPETWAAPLVGPEFGYRRRARVAVRWDAKAARLEVGFRAAASQSIVAVQD
CAVLVQPLQTILRALPPLLAGLERPQAIGHVELFHGTASSLLLRHTQPLVDGDLARLRAF
CAEHQALLWLQGAGEPQPDHADAQLGYRLEQWDLALGYRPGDFVQVNAWINEAMVRQALD
WLAPQDHERVLDLFCGLGNFALPLARMSREVVAVEGVEAMVERARDNARANGLGNAHFFA
ADLSKPLAEATWATGGFDAVLLDPPRDGAFEVARHLGELKAKRVVYVSCNPATLARDSAE
LVRQGYRLRTAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgtaacggtgggctgcgcttccagagcgggggcggcaagcgccaggccgcg
ccggcagtgccggtgggcaagaagcagaccctggaggtggagcgcctggcccatgacggc
cggggcatcgccttcgagcaggggcgcacctggttcgtcgacggcgccctaccgggcgag
tccgtcgaggcgcgggtgctgggtgcccgcagccaggtggtggaggcccgtgccgagcgt
atcctgcgggccagcccggagcgtcgcgccgagccgtgccctcatgcccgccagtgcggc
ggctgttcgctccagcatctgccccacgaagcccagctcgccctgaaacagcgcacgctg
gccgagcaactggagcgcttcgccggcctggtgccggaaacctgggccgcgccgctggtg
gggccggagttcggctaccggcgtcgcgcccgcgtggcggtgcgctgggacgccaaggcc
gcgcgcctggaggtgggtttccgcgctgcggcgagccagtccatcgtcgccgtgcaggac
tgtgccgtgctggtacagcccttgcagacgatcctgcgtgcgttaccgcccctgctggcc
ggcctggaaagaccgcaagcgatcggacacgtcgagctctttcacggcaccgcctcttcc
ctcctgctgcgccatacccaaccgctggtcgacggcgacctggcacgcctgcgcgcgttc
tgcgccgagcaccaggcgctgctctggctgcagggggcgggcgagccgcagccggaccac
gccgacgcgcagctgggttaccgattggaacagtgggacctggcgctgggctaccgcccg
ggcgatttcgtccaggtcaatgcctggatcaacgaagcgatggtccgccaggcgctagac
tggttggcaccccaggatcacgagcgggtcctggacctgttctgcgggctgggcaatttc
gccctgccgctggcgcggatgagccgcgaagtggtggcggtggaaggcgtcgaggcgatg
gtcgagcgggcccgcgacaacgcccgggcgaacggcctgggcaacgcgcacttttttgcg
gccgacttgtcgaagccgctggccgaagccacctgggcgaccgggggcttcgatgcagta
ttgctggatccgccgcgtgacggggcgttcgaggtggctcgccacctgggcgaactgaag
gcgaagcgggtggtgtatgtgtcctgcaacccggccaccctggcgcgcgacagcgccgag
ctggtccggcagggctaccggctgaggacggccggcatcctcgacatgttcccgcagacg
gcgcatgtggaggccatggcgttattcgaggcgggctag
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