Metapseudomonas otitidis: PtoMrB4_43470
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Entry
PtoMrB4_43470 CDS
T06890
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03030
DNA replication
poj03430
Mismatch repair
poj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PtoMrB4_43470 (dnaE)
03430 Mismatch repair
PtoMrB4_43470 (dnaE)
03440 Homologous recombination
PtoMrB4_43470 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poj03032
]
PtoMrB4_43470 (dnaE)
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_43470 (dnaE)
Enzymes [BR:
poj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PtoMrB4_43470 (dnaE)
DNA replication proteins [BR:
poj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PtoMrB4_43470 (dnaE)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PtoMrB4_43470 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BCA30370
UniProt:
A0A679GT86
LinkDB
All DBs
Position
complement(4713706..4717230)
Genome browser
AA seq
1174 aa
AA seq
DB search
MTVSFVHLRLHSEYSLVDGLVRVKPLIKAVAAAGMPAVAVTDQSNMCSLVKFYKAAQGGG
IKPICGADIWLASLDEDGPLSRMTLLAMDGKGYRNLTELISRGWSDGQSNGLVIIQRDWV
KEAAEGLIALSGAKEGEIGMALLNGDTAAAERLLAEWQAVFPDRFYLELQRTGRVNDEEH
VHAAVALADRCGAPLVATNDVRFIKADDFEAHETRVCIGEGRTLDDPRRPRNYSNQQYLK
SPEEMAELFSDLPDAIENTVEIARRCNIDVRLGKHFLPDFPTPNGMGIDDYLRHASYEGL
EERLAVLWPKETTPDYEEKRQLYIDRLEFELGTIIQMGFPGYFLIVADFIQWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEAAYNQE
EVLRDFLKSDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEMINREQEKNGLPLVDIDRIPLDDKKTYD
MLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCASNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGWVSYQTAWLKAHY
PSPFMAAVLTADMHNTDKVVTLIEECRSMKLRIVAPDVNNSDYRFTVDDAGQIIYGLGAI
KGVGEGPVEAIVECRDEGGPFKDLFDFCNRVDLKRINKRTLEALIRGGALDRLGPFFSDE
PKAYQAGIDRNRGVLLAAMEEAIQAAEQTARSHDSGHMDLFGGLFAEPDADVYANHRRAK
ELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTIAGLIVNLRV
MKNKKGDKMGFITLDDRSGRIEASLFADAFASAHTLLQTDALVVVEGEVSHDDFSGGLRL
RAKRVMSLEEARTGLAESLRMKVDHSALQGDRLRWLADLCGRHRGSCPITIDYAGPSARA
LLQFGEQWCIDPADTLIQALRDQFGRDNVFLHYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtttccttcgtgcatctccgtctccattccgagtactccctggtcgacggcctg
gtgcgggtcaagcccctgatcaaggccgtggcggctgccggcatgccagcggtggcggtc
actgaccagagcaacatgtgctccctggtcaagttctacaaggcggcccagggtggcggc
atcaagcccatctgtggcgccgacatctggctggcgagcctggacgaagacggccccctc
agccgcatgacgctgctggcgatggacggcaagggctatcgcaacctcaccgagttgatc
tcccgtggctggtccgatggtcagagcaacggcctggtgatcatccagcgcgactgggtg
aaggaggccgccgaaggcctgatcgctctgtccggcgcgaaggaaggcgagatcggcatg
gcgctgctcaacggcgacactgctgccgccgagcgcctgctggcggagtggcaggcagtg
ttcccggatcgcttctacctggagctgcaacgcaccggccgcgtcaatgacgaggaacat
gtgcacgcggccgtggccctggcggatcgctgcggagcgccgctggtggcgaccaacgac
gtgcgcttcatcaaggccgatgacttcgaggcccacgagacccgcgtgtgcatcggcgaa
ggccggaccctcgacgaccctcgccgtccgcgcaactactccaaccagcagtacctgaag
tcgccggaagagatggccgagctgttcagcgacctccccgacgccatcgagaacaccgtc
gagatcgcccggcgctgcaacatcgacgtgcgcctgggcaagcacttcctgcccgatttc
ccgacgcccaatggcatgggcatcgacgactacctgcgccacgcctcctacgaaggcctc
gaagagcgcctcgcggtgctctggccgaaggagacgaccccggactacgaagagaagcgc
cagctctacatcgaccgtctggagttcgagctgggcaccatcatccagatgggcttcccc
ggctacttcctgatcgttgccgacttcatccagtgggcgaagaacaacggcgtcccggtg
gggcctggccgtggatcgggtgccggctcgctggtcgcctacgtgctgaagatcaccgac
ctcgacccgctggcctatgacctgctgttcgagcgcttcctcaaccccgagcgggtctcc
atgcccgacttcgacgtcgacttctgcatggacggccgcgaccgcgtgatcgactacgtg
gccgagaagtacggccgcaacgcggtgagccagatcatcaccttcggctccatggcggcg
aaggctgtggtgcgtgacgtggcacgggtgcagggcaagtcctacggactggccgatcgc
ctgtcgaagatgatccccttcgaagtgggcatgaccctggaggcggcctacaaccaggaa
gaggtcctgcgggacttcctcaagtccgatgaggaagcccaggaaatctgggacatggcc
ctcaagctcgaaggcatcacccggggcaccggcaagcacgccggtggcgtggtgatcgcc
cccaccaagctgaccgatttcgcgcccattgcctgtgacgaggaaggcggcggcctggtg
acccagttcgacaaggacgacgtggaagcggccggcctggtgaagttcgacttcctcggc
ctgcgcacgctgacgatcatcaagtgggccatggagatgatcaaccgcgagcaggagaag
aacggcctgccgctggtggacatcgaccgcatcccgctggacgacaagaagacctacgac
atgctgcagaaggcggagaccaccgcggtcttccagcttgaatcccgcggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacatgatcgccctcgtggccctgttc
cgtccggggccgctgcagtccggcatggtggacgacttcatcaaccgcaagcacggccgt
gccgagctctcctacccgcacccggactaccagtacgccggcctcgaaccggtgctcaag
cccacctacggcatcatcctctaccaggaacaggtgatgcagatcgcccaggtgatggcg
ggctacaccctcggcggcgcggacatgctgcgtcgcgccatgggcaagaagaagcccgag
gaaatggccaagcagcgcggcggcttcatcgagggctgtgccagcaatggcatcgatgcc
gagctggcgggcaacatcttcgatctggtggagaagttcgccggttacggcttcaacaag
tcccactccgccgcctatggctgggtttcctaccagaccgcctggttgaaggcccactac
ccgtcgcccttcatggcggcggtgctcacggcggatatgcacaacaccgacaaggtggtg
acgctcatcgaagagtgccgcagcatgaagctgcgcatcgtcgcgccggacgtgaacaac
tccgactaccgcttcaccgtcgacgacgccgggcagatcatctacggcctcggtgcgatc
aagggcgtgggcgaggggccggtggaggccatcgtcgaatgccgtgacgagggtgggccg
ttcaaggacctgtttgacttctgcaaccgtgtcgaccttaagcgcatcaacaagcgcacg
ctggaagcgctgatccgtggcggtgcgctggatcgcctcgggccgttcttcagtgacgag
cccaaggcctaccaggctggcatcgaccgcaaccggggcgtgctgctcgcggcaatggag
gaagccatccaggccgccgagcagaccgcccgcagccacgacagcggccacatggacctg
ttcggcgggctcttcgccgagcccgacgccgacgtctacgccaaccaccgtcgggccaag
gagctgaccctcaaggagcgcctcaagggcgagaaggacaccctggggctctacctcacc
gggcaccccatcgacgaatacgagggcgaggtgcgccgcttcgcccgtcagcgcatcgtc
gagctcaagcccgcgcgggatacccagaccatcgccggcctgatcgtcaacctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcatcaccctcgacgaccgctccgggcgc
atcgaggcctccctgttcgccgatgccttcgcctctgcccacaccctgctgcagaccgat
gcgctggtggtggtggaaggggaggtgagccacgacgacttctccggtggcctgcgcctg
cgtgccaagcgcgtcatgagcctggaggaggcgcgtaccgggctggccgagagcctgcgg
atgaaggtggaccacagcgccctgcaaggcgaccgcctgcgctggctcgccgacctgtgc
gggcgccaccggggctcctgcccgatcaccatcgactacgcaggccccagtgcccgtgcc
ctgctgcagttcggcgagcagtggtgcatcgacccggccgatacgctgattcaggcattg
cgtgaccagttcgggcgcgacaacgtcttcctgcactaccggtga
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