Metapseudomonas otitidis: PtoMrB4_45830
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Entry
PtoMrB4_45830 CDS
T06890
Symbol
sbcD
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
poj
Metapseudomonas otitidis
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_45830 (sbcD)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PtoMrB4_45830 (sbcD)
Archaeal homologous recombinant proteins
PtoMrB4_45830 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
BCA30606
UniProt:
A0A679GHE3
LinkDB
All DBs
Position
complement(4966254..4967474)
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AA seq
406 aa
AA seq
DB search
MRILHTSDWHLGQHFMGKTRQAEHQAFCQWLLEQVRVHEVDAVLVAGDVFDTGAPPSYAR
EQYYRFIVDLRASGARLVVLGGNHDSVAMLGESRELLAQLDAWVVPAVVADPDEQVRVLP
RRDGQPGAVLCAVPFVRPRDVLLSQAGQSAEDKQLGLQQAIQAHYQALFERALQCRAASG
ADLPIIATGHLTTVGASASESVREIYVGALEAFPTGAFPAADYIALGHIHRPQKVGGLAH
IRYSGSPIPLAFDEARQQKEVLLVELDGSGLREVQALPVPCFQPLLSLRGSLAELPERLA
EAAREGTPERPAWLEVVVTTDDYLNDLQARLAQLCDGLPVEVLRIRRERGAARPGLQGEA
RETLDELSVEEVFQRRLGLEALEEAEAARLTDLYRQVLEQVRDDTA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcctgcacacctccgactggcacctgggccagcatttcatgggcaagacccgc
caggccgagcaccaggcgttctgccagtggctgctggagcaggtgcgggtgcatgaggtg
gacgcagtgctggtggccggcgatgtgttcgacaccggcgcgccgcccagctatgcccgc
gagcagtactaccgcttcatcgtcgacctgcgcgccagcggggcgcggctggtggtgctg
gggggcaaccacgactcggtggcgatgctcggcgagagccgcgagctgctggcccagctg
gacgcctgggtggtgccagcggtggtggccgacccggacgaacaggtgcgggtgctgccc
cggcgcgatggccagcccggtgcggtgctctgtgcggtgcccttcgtgcgcccccgcgac
gtgctgctgagccaggccgggcagagtgccgaggacaagcagctgggcctgcagcaggcc
atccaggcccactaccaggcgctgttcgagcgcgccctgcagtgccgcgccgcctcgggg
gctgacctgccgatcatcgccaccggccacctcaccacggtgggcgccagtgccagcgag
tcggtgcgggaaatctacgtcggtgcgctggaggccttccccaccggcgccttcccggcg
gccgactacatcgccctggggcatatccaccggccgcagaaggtcggcggcctggcgcac
atccgctacagcggctcgcccatccccctggccttcgacgaggcgcgccagcagaaggag
gtgctgctggtggagctggacggcagcggcctgcgcgaggtacaggcgctcccggtgccg
tgcttccagccgctgctgagcctgcgaggcagcctcgccgagctgcccgaacgtctagcc
gaagctgcccgcgagggcaccccggagcgcccggcctggctggaggtggtggtgaccacg
gacgactacctcaatgacctccaggcccgcctggcacagctgtgcgatgggctgccggtg
gaggtactgcgcatccgccgcgagcgcggtgctgcgcgccccggcctgcagggcgaggcg
cgggaaaccctcgacgagctgagcgtggaagaggtgttccagcgccgcctggggctcgaa
gccctggaagaggccgaggccgcgcggctgaccgacctctaccgccaggtgctggagcag
gtgcgcgacgacacggcctga
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