KEGG   Metapseudomonas otitidis: PtoMrB4_50580
Entry
PtoMrB4_50580     CDS       T06890                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
poj  Metapseudomonas otitidis
Pathway
poj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:poj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PtoMrB4_50580 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:poj03019]
    PtoMrB4_50580 (rnr)
   03016 Transfer RNA biogenesis [BR:poj03016]
    PtoMrB4_50580 (rnr)
Enzymes [BR:poj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PtoMrB4_50580 (rnr)
Messenger RNA biogenesis [BR:poj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PtoMrB4_50580 (rnr)
Transfer RNA biogenesis [BR:poj03016]
 Prokaryotic type
  tRNA degradation factors
   PtoMrB4_50580 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 WHD_RNase_R RNase_II_C_S1 OB_Dis3 TRAM_2
Other DBs
NCBI-ProteinID: BCA31081
UniProt: A0A679GI74
LinkDB
Position
complement(5463189..5465978)
AA seq 929 aa
MADWQNLDPEAAREAEKYDNPIPSRELILQRLDERGAPASREQLVEEFGLTTDDELEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDDLFLSPAQMR
LVFDGDRALARVSGHDRRGRREGALVEVIERAHETLVGRFFEESGIGRVVADNPKIQQEV
LVAPDKRGGARHGQFVQVRIEQWPSAFRLAQGEVVGVLGDYMAPGMEIEVALRSYDIPHE
WPEAVEKEAAKLKPEVAEKDKQKRVDLRDLPLVTIDGEDARDFDDAVYAEARKGGGWRLF
VAIADVSHYVKVGSALDEEAAKRGNSVYFPEKVVPMLPEVLSNGLCSLNPQVDRLAIVCE
VTLSRAGKMTGYEFYEAVIHSHARLTYTKVSQLLETPDSPEGQQLAEQMPHLVPHLQQLY
KLYKVLLAARHKRGAIDFETQETRIVFGADRKIAEIRPTQRNDAHKLIEECMLCANVATA
RFMQDHDIPSLYRVHDGPPAERLEKLRLFLGELGLTLNKGKGEPTPSDYQALLETIRDRP
DYHLIQTVMLRSLSQAVYSADNQGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKR
ETEHVRRAGAAAMPKARIYPYDEAALERLGEQCSMTERRADEATRDVTNWLKCEYMRERV
GETFPGVISAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDAIHHRLAGERSGRSFRLG
DQVEVVIARVDLDERKIDFELSENVLTAPVGRKKRGADKAAPVAEPRTAKGAKTRSRGSK
PSAQAKKAARAPQPEQMAPGVAVAPRRAKAGKVQALPPVAPEILAQAEEMLGNTDVKRSR
ALKQALLSEARQGGEKPREGKGKAGKGSSRAAPFGADGQDPAGKARPAKAGGDKSKKAKP
AAKASKPGKHRKGPPKPKAAGSGKNKVKS
NT seq 2790 nt   +upstreamnt  +downstreamnt
atggccgattggcaaaacctcgatcccgaggccgcacgcgaagcggaaaaatacgacaac
cccattcccagccgtgaactcatcctgcagcgcctcgacgaacgtggcgcgcccgccagc
cgcgagcagctggtggaagagttcggcctgaccacggacgacgagctggaagccctgcgg
cgccggctgcgtgccatggaacgtgatggccagcttatctatacgcgccgtggcgcctat
gcaccggtggacaagctcgacctcatacgcggccgcatcagcggccaccgggacggcttc
ggcttcctgatccccgacgacggcagcgacgacctcttcctcagccccgcccagatgcgc
ctcgtgttcgacggcgaccgcgccctcgcgcgcgtttccggccacgaccgccgtggccgc
cgcgaaggtgcgctggtggaagtcatcgagcgcgcccacgagaccctggtgggccgcttc
ttcgaagagagcggcatcggccgcgtggtcgctgacaatcccaagatccagcaggaagtg
ctggtggcccccgacaagcggggcggtgcacgccacggccagttcgtccaggtgcgcatc
gagcaatggccgagcgccttccgcctggcccagggtgaagtggtgggcgtactgggcgac
tacatggcgcccggcatggagatcgaagtcgccctgcgcagctacgacatcccccacgag
tggcccgaggccgtcgagaaggaggccgccaagctcaagcccgaagtggccgagaaggac
aagcagaagcgcgtcgacctgcgcgacctgcccctggtcaccatcgacggcgaggacgcc
cgcgacttcgacgatgcggtctatgccgaggctcgcaagggcggcggctggcgtctgttc
gtcgccatcgccgacgtttcccactatgtgaaagtcggttcggcactggatgaagaagcg
gccaagcgcggcaactccgtctacttccccgagaaggtcgtgccgatgctgccggaggtc
ctctccaacggcctctgttcgctgaacccccaggtcgaccggctggccattgtctgcgag
gtcaccctgtcccgggctggcaagatgaccggctacgagttctacgaagccgtcatccac
tcccatgcacggctcacctacaccaaggtcagccagttgctggagacgcccgactccccg
gaagggcagcaactcgccgagcagatgccgcacctggtcccgcacctgcagcagctctac
aagctctacaaggtgctcctggccgcacgccacaagcgtggcgccatcgacttcgaaacc
caggagacgcgcatcgtcttcggcgctgatcgcaagatcgccgagatccgcccgacccag
cgcaatgatgcccacaagctgatcgaggaatgcatgctctgcgcgaacgtcgccaccgcg
cgtttcatgcaggaccatgacattccctcgctctaccgtgtgcacgacggcccgccggcc
gagcgcctggagaagctgcgcctgttcctcggcgaactgggcctgaccctcaataaaggc
aagggcgaaccgacgccgagcgactaccaggcgctgctggaaaccatccgtgatcgtccg
gactaccacctgatccagacggtcatgctgcgctccctcagccaagcggtgtacagcgcc
gacaaccagggccacttcggcctcaactacgacgcctacacccacttcacctcgccgatc
cgtcgctacccggacctgctggtgcatcgtgccatccgcagcgtgatccgctccaagcgc
gaaaccgagcacgtccgtcgtgccggcgccgccgccatgcccaaggcgcgcatctaccct
tacgacgaagcggctctcgagcgccttggcgagcagtgctccatgaccgagcgccgtgcc
gacgaagccacccgcgatgtcaccaactggctgaagtgcgagtacatgcgcgagcgggtg
ggcgagaccttccccggcgtcatctccgccgtcaccggcttcggtctgttcgtcgaactc
accgacatctatgtggaaggcctggtgcacgtcaccgccctgcctggcgactactaccac
ttcgacgcgatccatcaccgcctcgccggtgagcgcagcggccgcagcttccgcctgggg
gatcaggtggaagtggtcatcgcccgggtcgacctggacgagcgcaagatcgacttcgag
ctgtccgagaacgtgctgaccgcgccggtcggccgcaagaaacgcggggccgacaaggcc
gcgccggttgctgagcctcgtaccgccaagggggccaagacccgcagccgcggaagcaag
ccctctgcccaggcgaagaaggccgcgcgagcgcctcagcccgagcagatggctcccggc
gtcgccgtggcaccccgtcgtgccaaggctggcaaggtccaggcgctgccgccggtggcg
cccgaaatcctcgcccaggccgaggaaatgcttggtaacaccgacgtcaagcgcagtcgc
gccctgaagcaggcgttgctcagcgaggcccggcagggcggcgagaaaccgcgcgaaggc
aagggcaaggccggcaagggttcgtcccgcgccgcgcccttcggcgccgacggccaggac
ccggccggcaaggccaggcctgccaaggcggggggtgacaagtcgaagaaggccaagccc
gccgccaaggcgagcaagccaggcaagcatcgcaaggggccgcccaagcccaaggccgcc
ggtagcggcaagaacaaggtcaagtcatga

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