KEGG   Metapseudomonas otitidis: PtoMrB4_50660
Entry
PtoMrB4_50660     CDS       T06890                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
poj  Metapseudomonas otitidis
Pathway
poj02024  Quorum sensing
poj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:poj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PtoMrB4_50660 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PtoMrB4_50660 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:poj03019]
    PtoMrB4_50660 (hfq)
   03036 Chromosome and associated proteins [BR:poj03036]
    PtoMrB4_50660 (hfq)
Messenger RNA biogenesis [BR:poj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PtoMrB4_50660 (hfq)
Chromosome and associated proteins [BR:poj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PtoMrB4_50660 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BCA31089
UniProt: A0A1I0UDC6
LinkDB
Position
complement(5474967..5475221)
AA seq 84 aa
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSASEQEQPEPGNA
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctgaataccttgcgtaaggaacgcgta
ccggtttccatctacttggtcaacggcatcaagctgcagggccagatcgaatccttcgac
cagttcgtgatcctgctgaagaacaccgtcagccagatggtctacaaacacgccatttcc
accgttgtaccgagccgccccgtccgcctgcccagcgccagcgaacaagagcagcctgag
cccggtaacgcctga

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