Metapseudomonas otitidis: PtoMrB4_53620
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Entry
PtoMrB4_53620 CDS
T06890
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtoMrB4_53620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poj03019
]
PtoMrB4_53620
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_53620
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PtoMrB4_53620
Messenger RNA biogenesis [BR:
poj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PtoMrB4_53620
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PtoMrB4_53620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCA31385
UniProt:
A0A679GPI7
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All DBs
Position
5816056..5817993
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AA seq
645 aa
AA seq
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MPLATLARVFGYDRFRPGQESAVSAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVV
SPLLALMQDQLAFLHAHGIAAASIDSAQSREEAAEVMARARSGELKILMISVERLKNERF
RHFIQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFGIPQVLLLTATATPAVIAD
MQRKFAIDSADVVTTGFYRPNLHLQVEPVAGEQRRRYLVDWLRARPGKPGIVYVTQQKSA
EELAAHLTRQGIDACAYHAGLDHSVREGLQRRFMNGEVNLMVATIAFGMGIDKADIRLVV
HYDLPKSVENYSQEIGRAGRDGQPSECLVLANRDGLNVLENFVYGDTPERDGIAEVLQEL
RSATGPDGRWELMAGALSEQSNIRPLPLKTLLVQLELRGLIAPLFAYFAEYRFKYLIEPE
ALLARFEGERRQFVQALVDTSTRARTWCTVDFDRLYRDHAAERARVVKALDFFQERGWIE
LESKQMTEVYALRQPDFDAEALADELYRYFRQQEDSEIARIQAMLALFASDTCLSARLAR
YFGDQAAPAACGHCSVCAGRVAVLPQPAPLAPLAGQDLEGRCQAFIERYREAKGRAPSVD
CLTRLLCGIATPVFTRLKARSLPAFGALEAYPYAEVRQQLADTRR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgccaccctcgcccgcgtcttcggctacgaccgcttccgccccggccaggaa
tccgccgtcagcgccgtgctggccggccgctcggccgcggcgatcttccccaccggctcc
ggcaagtccctctgctaccaactgcccgcgctgcacctgccgcacctgaccctggtggtg
tcgccgctgctggcgctgatgcaggaccagctggccttcctccacgcccacggcatcgcc
gccgccagcatcgactcggcccagagccgcgaggaggctgcagaggtcatggcccgcgcc
cgcagcggcgaactgaagatcctgatgatctcggtggagcggctgaagaacgaacgcttc
cgccacttcatccagcaggtgccgatctccctgctggtggtggacgaagcccactgcatc
tccgagtggggccacaacttccgccccgactacctcaagctgccggactaccagcgcgag
ttcggcatcccccaggtgctgctgctcaccgccacggccaccccggcggtgatcgccgac
atgcagcgcaagttcgccatcgactccgccgacgtggtcaccaccggcttctaccggccc
aacctgcacctgcaggtggagcccgtggccggcgagcagcgccgccgctacctggtggac
tggctgcgggcccggcccggcaagcccggcatcgtctacgtcacccagcagaagagcgcc
gaagagctggccgcccacctcacccgccagggcatcgacgcctgcgcctaccacgccggc
ctcgaccacagcgtgcgcgaaggcctgcagcggcgcttcatgaacggcgaggtgaacctg
atggtcgccaccatcgccttcggcatgggcatcgacaaggccgacatccgcctggtggtg
cactacgacctgcccaagtcggtggagaactacagccaggagatcggccgcgccggccgc
gacggccaaccctcggaatgcctggtgctggccaaccgcgacggcctcaacgtgctggag
aacttcgtctacggcgacacccccgagcgcgacggcatcgccgaggtgctgcaggaactg
cgcagcgccaccgggcccgacgggcgctgggagctgatggccggcgccctctccgagcag
agcaacatccgcccgctgccgctgaagaccctgctggtgcaactggagctgcgcggcctg
atcgccccgctgttcgcctacttcgccgaataccgcttcaagtacctgatcgagcccgag
gcactgctggcgcgcttcgagggcgagcgccggcagttcgtccaggccctggtggacacc
tccacccgcgcgcgcacctggtgcaccgtggacttcgaccggctctaccgcgaccacgcc
gccgagcgtgcgcgggtcgtgaaggccctggacttcttccaggagcgcggctggatcgag
ctggaaagcaagcagatgaccgaggtctacgccctgcgccagcccgacttcgacgccgag
gccctggccgatgagctctaccgctacttccgccagcaggaggacagcgagatcgcccgc
atccaggccatgctcgcgctgttcgccagcgacacctgcctcagcgcccggctggcccgc
tacttcggcgaccaggccgccccggccgcctgcggccactgctccgtgtgcgccggccgg
gtggcggtgctgccgcagccggcaccgctggcgcccctcgccggacaggatctggaaggc
cgctgccaggccttcatcgagcgctaccgcgaggccaagggccgcgcccccagcgtcgac
tgcctgacccgcctgctctgcggcatcgccaccccggtgttcacccgcctcaaggcccgc
agcctgcccgccttcggcgccctggaggcctacccctacgccgaggtgcgccagcaactg
gccgatacccggaggtga
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