Metapseudomonas otitidis: PtoMrB4_54810
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Entry
PtoMrB4_54810 CDS
T06890
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03420
Nucleotide excision repair
poj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PtoMrB4_54810 (uvrD)
03430 Mismatch repair
PtoMrB4_54810 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_54810 (uvrD)
Enzymes [BR:
poj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PtoMrB4_54810 (uvrD)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PtoMrB4_54810 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PtoMrB4_54810 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCA31504
UniProt:
A0A679H099
LinkDB
All DBs
Position
complement(5961150..5963333)
Genome browser
AA seq
727 aa
AA seq
DB search
MQNDPELLIASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLILTEGASPHSIL
SVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDGDD
QQRLIKRVIRDLGLDEQRWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMLKIYEAYE
AACARTGVIDFSELLLRALDLWRDKPSLLAHYQRRFRHLLVDEFQDTNAVQYAWLRLLAQ
GGESLMVVGDDDQSIYGWRGARIENIQQFASDFPDVQTIRLEQNYRSTAAILKAANALIA
NNNGRLGKELWTDGPDGEPLGLYAAYNEHDEARYVVESIESALKDGMARSEIAILYRSNA
QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERVINVPPRGI
GEKTVESIREFARAQDVSMWEAIRLLLANKGLSGRAASALAVFVELVENLAAKVLEMPLH
LMTQTVIEQTGLITYHKEEKGEKGQARVENLEELVSAARAFENSEEDEELTPLQAFLSHA
SLEAGEAQADAFEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSMEEPGRLEEERRL
AYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFVREIPASLVREVRLGNTVSRPMAGSA
TRTPSMFSGAEVPETGFTLGQRVQHALFGEGTILNFEGAGAQARVQVKFESEGSKWLMLA
YAKLQPL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgaccccgaactcctcatcgcgtccctcaacgatgcccaggtgcaggctgtg
gccgctccgctgggccgccagctggtgctggccggcgccggctccggcaagacccgcgtg
ctggtgcatcgcatcgcctggctgatcctcaccgagggcgcctcgcctcattccatcctc
tcggtgaccttcaccaacaaggctgccgccgagatgcgccaccgcatcgagcagctgctg
ggcatcaacccggccggcatgtgggtgggcaccttccacggcctggcgcaccgcctgttg
cgcgcgcactggcaggaggccgggctggcggagaacttccagatcctcgatggcgacgac
cagcagcggctgatcaagcgggtgatccgcgacctcgggctggacgagcagcgctggccg
gcgcgccaggcgcagtggttcatcaacgggcagaaggacgagggcctgcgcccgcagcac
atccaggccggcggcgacctgttcctcgccaccatgctgaagatctacgaggcctacgag
gccgcctgcgcgcgcaccggggtcatcgacttctccgagctgctgctgcgcgccctcgac
ctctggcgcgacaagccgagcctgctggcgcactaccagcggcgcttccgccacctgctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggctgcgcctgctcgcccag
ggtggcgagagcctgatggtggtgggcgacgatgaccagtccatctacggctggcgcggc
gcgcggatcgagaacatccagcagttcgccagcgacttcccggatgtgcagaccatccgc
ctggagcagaactaccgctccaccgcggccatcctcaaggccgccaacgccctgatcgcc
aacaacaacggccgcctgggcaaggaactctggaccgacggtccggacggcgagccgctg
ggcctctatgccgcctacaacgagcacgacgaagcccgctacgtggtggaaagcatcgag
agcgcgctgaaggacggcatggcgcgcagcgagatcgccatcctctaccgctccaacgcc
cagtcgcgggtgctggaagaggcgctgctgcgggagaagatcccctaccgcatctacggc
ggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctacctgcgcctgctg
gacggccgtggcaacgacgctgcgctggagcgggtgatcaacgtgccgccgcgcggcatc
ggcgagaagaccgtggagagcatccgcgagttcgcccgcgcccaggacgtgtccatgtgg
gaggcgatccgcctgctgctggccaacaagggcttgtcggggcgcgcggcgtcggccctg
gcggtgttcgtcgaactggtggagaaccttgccgccaaggtcctggagatgccgttgcac
ctgatgactcagaccgtcatcgagcagaccgggctgatcacctaccacaaggaagaaaaa
ggcgagaaaggccaggcccgggtggagaacctggaggaactggtcagtgccgcccgtgcc
ttcgagaacagcgaggaggacgaggagctgacgccgctgcaggccttccttagccacgcg
tccctggaagccggcgaagcccaggccgatgccttcgaggacagcgtccagctgatgacc
ctgcacagcgccaagggcctggagttccccctggtgttcctggtgggcatggaagagggc
ctgttcccccacaagatgagcatggaggaacccggccgcctggaagaggaacgccgcctg
gcctacgtcggcgtcacccgcgccatgcagcgcctggtgctgacctacgccgagacccgg
cgcctgtacggcagcgagacctacaacaaggtctcgcgcttcgtccgcgagattcccgcc
tcgctggtgcgcgaagtgcgcctgggcaataccgtcagccgcccgatggccggcagcgcc
acgcgcacgccgtcgatgttcagcggtgccgaagtgccggagaccggcttcaccctcggc
cagcgtgtgcagcacgcgctgttcggcgagggcaccatcctcaacttcgaaggcgccggc
gcccaggcgcgggtgcaggtgaagttcgagagcgaaggcagcaagtggctgatgctggcc
tacgcgaagttgcagccgctctga
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