Pseudarthrobacter oxydans: SMD14_08100
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Entry
SMD14_08100 CDS
T09608
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pok
Pseudarthrobacter oxydans
Pathway
pok03030
DNA replication
pok03430
Mismatch repair
pok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMD14_08100 (dnaE)
03430 Mismatch repair
SMD14_08100 (dnaE)
03440 Homologous recombination
SMD14_08100 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pok03032
]
SMD14_08100 (dnaE)
03400 DNA repair and recombination proteins [BR:
pok03400
]
SMD14_08100 (dnaE)
Enzymes [BR:
pok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMD14_08100 (dnaE)
DNA replication proteins [BR:
pok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMD14_08100 (dnaE)
DNA repair and recombination proteins [BR:
pok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMD14_08100 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WPU10938
LinkDB
All DBs
Position
1783821..1787378
Genome browser
AA seq
1185 aa
AA seq
DB search
MTSSNDSFVHLHNHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWKKAT
DKGIKPIIGVEAYVTPGTARGDKSRVRWGEEHQRKDDISGGGSYTHMTLLSYNNAGMRNL
FRASSIASLDAVFGKWPRLDRELLNTYSEGLIATTGCPSGEIQTRLRLGQYREALEAAAE
FRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEAL
LAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPREMRELFRDHPDACDNTLLIAERCEVS
FNTGANYMPRFPCPPGEDETSWLVKEVAKGLEYRYPCGVPDNVRAQADYELGVITSMGFP
GYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIFERFLNPDRVS
MPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVLGYPFSMGET
LTKALPPAVMAKDIPLADIQNPEAKRYGEAGDFRQLISTDPEAAKVFETALGIEGLKRQW
GVHAAGVIMSSDPIIDVIPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDA
LENIKMNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFEDIS
AVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELKEPLAEILGGTYGLIVYQEQVMAV
AQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMEAVKTLWDILLPFSD
YAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNECRRMGITVLP
PDVNESALNFTPVGNDIRFGMGAIRNVGVNVVEAMVAARESEGAFTSFKDYLMKVPAVVC
NKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFAGFDEAESES
SLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHAEMSITSVLGEDGPQD
GAIITIAGMITSLSRRIAKASGNAYARAEVEDLGGSMEVMFFGQVYGPIASVLAEDLIVV
VKGRLQKRDDGAITLNCMELSVPDLSEGLNGPLVITMPTYKATEAVVTELGDVLRTHRGN
SEVRLHLQGDTRTEIMGLPVHLRVNPSPSLFGDLKVLLGPACLDA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccagcaacgactcgtttgtccatctccacaaccacaccgagtattcgatgctg
gacggcgccgccaggctcggcgagctgttcgatgagacggagcggctgggcatgccggcc
ctcgccaccacggaccacggctatctcttcggggccttcgacttctggaagaaggccacc
gacaaagggatcaagccgatcatcggcgtcgaagcctacgtgactccgggaactgcccgc
ggcgacaagagccgcgtgcgctggggtgaggaacaccagcgcaaggacgatatttccggc
ggcggctcctacacccacatgaccctgctcagctacaacaacgcaggcatgcggaacctg
ttccgggcgtcctccatcgcctcgctggatgcagtcttcggcaaatggccgcgcctggac
cgggagctgctgaacacctactcggagggcctgatcgccaccacgggctgcccgtccggt
gagatccagacgcggctgcggctgggccagtaccgcgaggcgctcgaggccgcagccgag
ttccgggacattttcggggcggagaactacttctgcgaactcatggaccacgggctggac
atcgagcggcgcgtcaccggggacctgctgcggctcgccaaggagctgaacctccccctg
gtggccacgaacgacctccactacacccacgagcacgatgccaaggcccacgaggccctg
ctggccatccagtccggttcaaccctcctggaacccacgtacgacaacggcgggtcccgc
ttcgccttctccggcagcggctactacctgaagtcgccccgggaaatgcgggaactgttc
cgcgaccaccccgacgcatgcgacaacaccctcctgatcgccgaacgctgcgaagtgtcc
ttcaacaccggggccaactacatgccgcggttcccctgcccgccgggcgaggatgaaacg
tcctggctggtcaaggaagtggccaagggacttgagtaccggtatccgtgcggcgtcccc
gacaacgtccgcgcccaggccgactacgaactgggcgtcatcacctccatgggtttcccc
ggctacttcctggtggtggcggacttcatcaactgggccaagaacaacggcatcagggtt
ggccccggccgtggttccggcgccggctcgatggtggcctacgccatgcgcatcaccgac
ctggaccccctgcgccacggcctgatcttcgaacggttcctgaacccggaccgcgtctcc
atgcccgacttcgacgtcgacttcgatgaccggcgccgctccgaagtcatcgactacgtg
acccggaagtacggcgacgaacgcgtggccatgatcgtcacgtacggcaccatcaagacc
aagcaggcgctgaaggactcctcgcgcgtgctgggctacccgttcagcatgggtgaaacg
ctcaccaaggccctgccgccggcggtgatggccaaggacatcccgctggcggatatccag
aacccggaggccaagcgctacggcgaagcgggcgacttccgccagctcatcagcacggac
cccgaagctgcgaaagtctttgagaccgcgctgggcatcgagggcctgaaacggcagtgg
ggcgtgcacgcagccggcgtcatcatgtcctcggatccgatcatcgacgtcattcccatc
atgcgccggatccaggacggccaggtcattacccagttcgactaccccacatgtgagggc
ctcggcctgatcaagatggacttcctgggcctgcggaacctgacgatcatttccgacgcc
ctggaaaacatcaagatgaaccgcggcatcgacctggacctggaaaacctggaactcgac
gacgccccttcctatgagctgctggcccgcggcgacaccctgggcgtcttccagctcgac
ggcggacccatgcggtccctgctcaagctgatgaagcctgacaacttcgaagacatttcc
gccgtgctcgccctgtaccggccgggccccatgggcgcgaacgcccacacggactatgcg
ctgcggaagaacgggatccaggaagtcattcccatccacccggaactgaaggaacccctt
gcggagatcctgggcggaacgtacggcttgatcgtgtaccaggaacaggttatggcggtc
gcccagaagctggccggctactcgctgggccaggcagacatcctccgccgcgccatgggc
aagaagaagaaatcggaactggacaagcagttcgccggtttctcccagggcatgcaggac
aacgggtactccatggaagccgtgaaaaccctctgggacatcctgcttcccttctccgac
tacgccttcaacaaggcacactcggccgcctacggcgtcatttcctactggaccgcttac
ctcaaggcgcactacgcgccggagtacatggccgcgctcctgacctccgtgggtgatgac
aaggacaagtcggcgatctacctcaacgaatgccggcgcatgggcatcaccgtgctgccg
ccggacgtgaacgagtccgcgctgaacttcaccccggtgggcaacgacatccgcttcggc
atgggcgccatccgcaacgtcggcgtcaacgtggtggaggccatggtggctgcccgcgaa
agcgagggcgcgtttacgtcgttcaaggactatctgatgaaggtccccgccgtggtctgc
aacaagcggaccattgaatcgctgatcaagtccggcgccttcgactcgctgggccaccac
cgccgggccctggccatgatccacgaagaggccatcgactccgtcatcacgctcaagcgg
aacgaagcgatcggacagttcgacctcttcgcagggttcgacgaagccgaatccgagtca
tccctgagcatcgagatcccggacctgccggagtgggagaagaaggacaaactctccttc
gaacgggacatgctgggactctacgtttcggaccaccccctgcagggcctcgaagggctg
ctgagccagcatgcggagatgagcatcacctccgtcctgggcgaagacggaccgcaggat
ggcgcgatcatcaccatcgccggcatgatcacgtcgctgagcaggcgcattgccaaggcc
agcggcaacgcctacgccagggccgaagtggaggacctgggcggctcgatggaagtcatg
ttcttcggccaggtctacggccccatcgcatctgtcctcgccgaggacctgatcgtggtg
gtgaaggggcgcctgcaaaagcgcgacgacggcgccatcaccctgaactgcatggaactg
tccgttccggacctcagcgaggggctcaacggcccgctggtgatcaccatgcccacctac
aaggccacggaagcggtggtcaccgaactgggcgacgtcctccgtacccaccgcgggaac
tccgaagtgcggctgcacctgcagggtgacacccggacggagatcatgggcctgccggtc
cacctgcgcgtgaaccccagcccgtccctgttcggcgacctgaaagtgctcctcgggccc
gcctgcctggacgcctga
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