Pseudarthrobacter oxydans: SMD14_12765
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Entry
SMD14_12765 CDS
T09608
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pok
Pseudarthrobacter oxydans
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pok03019
]
SMD14_12765 (hrpA)
Enzymes [BR:
pok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SMD14_12765 (hrpA)
Messenger RNA biogenesis [BR:
pok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SMD14_12765 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_23
nSTAND3
PhoH
Motif
Other DBs
NCBI-ProteinID:
WPU08040
LinkDB
All DBs
Position
2825466..2829437
Genome browser
AA seq
1323 aa
AA seq
DB search
MTLHISYPAELPVSERREDLMAAIAANQVTIIAGETGSGKTTQIPKMCLELGLGENGLIG
HTQPRRLAARTVAERIAEELGVDIGQEVGFQVRFTGEVSRATKVKLMTDGILLAEIQRDK
LLRKYNAIIIDEAHERSLNIDFILGYLKRILPQRPDLKVIITSATIDPQRFANHFGTPEE
PAPIVEVSGRTYPVEIRYRPLSQPPGGAGPDDENGSDDELEEDRDPLDAVCDAVDELALE
APGDILVFFSGEREIRDAAEALQARIQSNRRLAGTEVLPLFARLSLQEQHKVFHPGNKRR
IVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGRV
SDGIAIRLYSEEDFDSRPLYTDPEILRTNLAAVILQMTAMGVARGPKDVENFPFVEPPET
RAINDGVTLLRELGALAAARPQNGTDGAKSGGGLTAVGQKLAQLPVDPRLGRMIVEAGKR
GCVREVMVLAAALTIQDPRERPTDKQQLAAEKHNRFKDENSDFTGFLNLWNYLQEKQQEL
SSSAFRRMCRAEFINYLRVREWQDLFAQLRQLARPLGISLDNKRLADPVGNHEGIHISLL
SGLLSHIGILDERKREYAGARGSRFAIFPGSALFKKSPTFVMAAELVETSRLWARVAAKF
DPVWAEQVAPDLVKRSYSEPHWSTRQGSVMAYEKVTLYGVPIIAQRRINYGRVDPVVARE
LFIRHALVEGDWKTHHKFFHRNRSLLNEVEELEARMRRRDLLVDDETLFEFYDARIGPDV
VSERHFDKWWKEARQKNPDLLDYDKSLLLSDDADDLDDSAYPKTWLHKGFELPLSYEFHP
VAPGSPPNPSDGVTAEVPVLFLNQLDDKAFRWLIPGQRVELVTALIKSLPKQVRKNFVPA
PDVARQAVALLEADFDPAVDELEPSLELALRRIRGHVIPPGSWNWDAVPPHLRVSFKVVD
SKGKVLDEGKDLAALQEKLAPATRRAIAESLGATPASTAPGAGNGKKAGKTRDAGSSAAR
QPAEVPGAGAPPGFREQDGLTEWTVGTVRRQVSSTVNGHTVTGYPALVDQGTSVSLRVFQ
TAEEQQEAMRGGVVRLLALRVPAPDRYVLEHLSNTEKLTFSQNPHGSVSSLIADCALAAI
DKLTPAELPWDRESFDRLYEVVRAELIDTVFSVTAVVERILASTRRIEKQLKGTTSLALI
SALNDIKSQLEQLVYPGFVARTGYAQLSQLPRYLTAIEKRLERLPGNVQRDALNMAAVQR
LEDDYDDAVSALLPGRKAGPELTQVRWMLEELRVSLFAVELGTAYSVSEKRIRAVLNKAL
APA
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcacatctcctatcccgccgagctgccggtctccgagcggcgcgaagacctg
atggcagccatagcggcgaaccaggtcaccatcatcgccggcgagaccggttccggtaag
accacccagataccaaagatgtgcctcgaacttggcctgggcgaaaacgggctgatcggc
cacacccagccgcgcaggctggccgcccgcacggtggccgagcgcatcgccgaggaactt
ggcgtggacatcggccaggaggtgggcttccaggtccgcttcaccggtgaggtcagccgc
gccacgaaggtcaagctgatgaccgacggcatcctgcttgcagaaatccagcgggacaaa
ctgctgcgcaagtacaacgcgatcatcatcgacgaggcccacgagcgaagcctcaatatc
gacttcatcctgggctacctcaagcggatcctgccgcagcggccggacctcaaggtgatc
atcacctccgccaccatcgacccccagcgctttgccaaccatttcggcacaccggaagaa
cccgcacccattgtcgaggtctccgggcggacctacccggtggaaatccggtaccgcccg
ctctcccagccgccaggcggagccggccctgacgacgagaacggttccgatgacgaactc
gaggaagaccgcgatccgcttgacgccgtgtgtgacgccgtcgacgaacttgccctggaa
gcgccgggcgacatcctggtgttcttttccggcgagcgagaaatccgcgacgctgccgaa
gcgctgcaggcccgcatccagtccaaccgccggctggccggaaccgaagtccttccgctc
ttcgcacggctgagcctgcaggaacagcacaaggtcttccaccccggcaacaagcgcagg
attgtccttgccaccaacgtcgccgaaacctcgctcacggttccaggcatcaagtacgtc
atcgacaccggcaccgcccgcatctcccggtactcgcaccgcaccaaggtccagcggctg
cccatcgaacgggtctcgcaggcgtccgccaaccagcgttcggggcggtgcggccgcgtc
tcggacggcatcgccatccgcctgtactccgaggaagacttcgattcgcggccgctgtac
accgacccggaaatcctgcggaccaacctcgccgccgtcatcctgcagatgaccgccatg
ggagtggcgcgcggccccaaggacgtcgaaaacttccccttcgtggagccgcccgaaaca
cgggccatcaacgacggcgtcacgctgctccgcgaactcggcgccctcgctgccgcccgg
ccgcagaacggcacggacggggctaaaagcggcggcgggctcaccgccgtcgggcagaag
ctcgcccagctgccggtggacccccgcctgggccggatgatcgtggaggcgggcaaacgc
ggctgcgtccgcgaggtgatggtcctggccgcggccctcaccatccaggacccgcgcgag
cgtccaacagacaagcagcaactcgcggcggaaaagcacaaccggttcaaggacgagaac
tcggacttcaccggcttccttaacctctggaactacctgcaggagaagcagcaggagctc
tcgtcgtccgccttccgccggatgtgccgggccgagttcatcaattacctccgggtccgg
gagtggcaggacctgtttgcccagctgcgccagctggcccggcccctgggcatcagcctc
gacaacaagcggcttgccgatccggtgggcaaccacgagggcatccacatcagccttctt
tccggcctcctgagccacatcggcatcctggatgagcgcaagcgggagtatgccggagcc
cgcggcagccggttcgccatcttccccggctctgccctcttcaagaagtcgcccacattc
gtgatggcggcggaactcgtggagaccagccgcctctgggcgagggtggctgcgaagttc
gatcctgtatgggccgagcaggtggccccggacctggtgaagcgcagctacagcgaaccg
cactggtccacccggcaaggttcagtgatggcctacgaaaaggtcaccctctacggcgtg
cccatcatcgcccagcgcaggatcaactacggcagggttgaccccgtcgtcgcccgggaa
ctcttcatccgccatgccctggtggaaggcgactggaaaacccaccacaagttcttccac
cgcaaccggtccctcctcaatgaggtggaggaactggaggccaggatgcgccgccgggac
ctcctggtggatgacgagacgctgttcgagttctacgatgcgcggatcggacctgacgtg
gtgtccgagaggcacttcgacaagtggtggaaggaagcgcggcagaagaacccggacctc
ctggactacgacaaatccctcctcctcagcgacgacgcggacgaccttgacgactccgcc
taccccaaaacgtggctgcacaagggcttcgagcttccgctgagctacgagttccacccg
gtggctccgggttcgccgcccaacccgtccgacggcgtcacggccgaggtgccggtgctg
ttccttaatcagctggatgacaaggccttccgctggctcatacccgggcagcgtgttgag
ctggtgacggccctgatcaaatccctgcccaagcaggtccggaagaacttcgttcccgcc
ccggacgttgcccggcaggcggtggcactcctggaagccgatttcgatccagccgtggat
gaactcgaaccttcccttgagcttgccctgcgccggatccggggacacgtcatcccgccg
ggttcgtggaactgggacgcggtgcccccgcacctgcgggtgagcttcaaggtggtggac
agcaagggcaaagtcctggacgagggcaaggacctcgccgcgctccaggagaagctggcc
ccggcaacgcggcgggccatcgccgagtcgctgggggccacgcctgcctccaccgcgccc
ggcgccggcaacggcaaaaaagcagggaaaacgcgcgacgccggatcatccgcggcgcgg
cagcctgccgaagtgccgggggccggagccccacccggcttccgggaacaggacgggctc
accgaatggacggtcggaacggtccggcgccaggtcagcagcacggtcaacggccataca
gtgacgggttacccggcactggtggaccagggcacgtcggtgtcactgcgtgtcttccag
accgccgaggaacagcaggaggcaatgcgcggcggggtggtcaggctgctggccctgcgc
gttccggctcctgaccggtacgtgctggagcacctgagcaacacggagaaactcactttc
agccaaaacccgcacggctcggtctcaagcctgatcgcggactgcgccctggccgccatc
gacaagctcacgcccgcggaactgccctgggaccgggagtcctttgaccggctgtacgag
gtggtccgggccgaactgatcgacaccgtgttcagcgtcaccgccgtggtggaacgcatc
ctggccagcacccggcggatcgaaaaacagctgaagggcaccaccagcctggcgctgatc
agtgccctcaacgacatcaaaagccaactggaacagctggtctaccccggctttgtggca
cggacgggctacgcccagctgagccaactcccccggtaccttacggccattgagaagagg
ctggaacgcctgccgggcaacgtccagcgcgacgccctgaacatggccgcggtgcagcgg
ctcgaggacgactacgacgacgccgtatcggccctgctccccggacggaaggccggccct
gagttaacccaggtgcgctggatgctcgaggagctccgggtgagcctcttcgccgttgaa
ctcggaacagcgtattcggtgtcggagaagaggatccgcgccgtgctcaacaaggcactt
gccccggcctag
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