Pseudarthrobacter oxydans: SMD14_13485
Help
Entry
SMD14_13485 CDS
T09608
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pok
Pseudarthrobacter oxydans
Pathway
pok03420
Nucleotide excision repair
pok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMD14_13485
03430 Mismatch repair
SMD14_13485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pok03400
]
SMD14_13485
Enzymes [BR:
pok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMD14_13485
DNA repair and recombination proteins [BR:
pok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMD14_13485
MMR (mismatch excision repair)
Other MMR factors
SMD14_13485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WPU08167
LinkDB
All DBs
Position
complement(2980734..2984315)
Genome browser
AA seq
1193 aa
AA seq
DB search
MQNSPTALSALAPVSGPGGDAGPPPEPRFSPEELSVLLGEKNVPTPEQSAIISSPLAPRL
VIAGAGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAGELASRIRGKLAALQRVVV
QDRGVQDGADADSGGRVFQHGLLSSDALEPKVSTYHSFASGIVSDYGLRLGVERDVVLLG
GAQAWQLASEVVEGYDGEYGHFRAAKSTLVKAVIQLAGECAEHLQEPEDVEAWLMARLSD
FESLPYLATKKRNAPQAAADLAGMLRTRASVADMVGRYAAAKRARGALDFGDLVALAARV
AQDVPLAAHMERQRYKVVLLDEFQDTSHAQLVLFSRLFGGGHAVTAVGDPNQSIYGFRGA
SAGQLFHFVREFPVWKGRPGHGTEPTGAEGTPAGGMAEGGADWAPAPTSYLTTAWRNGRS
ILAAANVMSESLARSAAQRGPAGGGGPAAPKVPPLQPSPYAAAGSVVLGRFGSDVDEASA
LADDVLKYRVTDFELKPDGSPVPPAIAVLCRRRAQMEPIRRQLEARGIPYEIVGLGGLLD
TPEIVDLVATLRVLADPGRSDALMRLLAGARWRIGPADLMALRDWSSQLARRRAQAGRGD
DQLPDDGPAVLEGDLTDGASLVEALDWLPREGWTSSNGRSLTPAARERMVRFSTELRQLR
GYLGDDLTTLLGEVERAMLLDIEVAARPGISIHQARRNLDAFQDAAAGFLRTSQRVDILA
FLSWLEAASAEENGLEAPPGDVNREAVQLLTVHASKGLEWDVVFVPGLNAKDFPSDRDSR
WSSGSAALPWPLRGDRADLPQWDLDQPDQKGWLDAEKDFKAAVQAHAESEERRLAYVAYT
RAKHVLWASSAAWVGSRSGRAEMSPFLAELETLAAAASEGTAPAVIHPRSVEESSLPETS
PLTLDTEVAGWPYDPLEGPVDPRTGERLRLAGGRRRAMETAAARVAAALEDAPRARTATR
EPELTGVAAGWAREAALLLERRARRSSANDVHLPAHISASTLVDLGEDPSAVAWRLRRPV
PREPGMSARKGTAFHAWVEEYFGTAGMLDLGEAPGSDDHIDAAYDLDAMVATFRSSPWAH
RSPAFIEVPVETRIGDVVVRGRVDAVFQDPDGRWDLVDWKTGRRPSGDLLRAKAVQLAVY
RLAWSRLKGVPLEDVRAAFFYVADNEVVRPHDLGTAGQLEGIVAAALASPSPS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaactccccgactgccctctccgcccttgccccggtttccgggcccggcggggat
gcagggccacccccggagccccgcttcagccccgaggagctttcggtgctcctcggggag
aagaacgttcctacccccgagcagtcggccatcatttcgtcgccgctcgcgccgaggctg
gtcattgcgggggcgggatccggcaagacagccaccatggcggaccgggtggtgtggctc
gtggccaatggctgggtccgtcccgaggaagtgctgggcgtgacgttcacccggaaggca
gcaggtgaactcgcctcgcgcatcaggggaaaactggccgccctccagcgcgtggttgtc
caggatagaggtgtccaggacggcgccgacgcggacagcgggggcagggtgttccagcac
gggctgctcagcagtgatgcgctcgaaccgaaagtttccacctaccactccttcgccagc
ggcatcgtctctgactatgggctccgccttggagtggagcgggacgtggtcctgctgggc
ggcgcgcaggcctggcagttggccagcgaggtcgtggagggttacgacggcgagtacggg
catttccgcgccgccaagtccacgctcgtgaaagcagtcatccaacttgccggtgaatgc
gccgagcacctccaggaacccgaagacgtcgaagcctggctgatggcgcggctgtccgac
tttgagtcattgccgtatctcgccaccaagaaaaggaacgccccgcaggcagcggctgac
ctcgccggcatgttgaggaccagggcaagcgtggcggacatggttggccggtacgcggcg
gccaagcgggcccggggagcacttgattttggcgacctggtggcccttgccgcccgcgtg
gcgcaggacgtgcctttggccgcccacatggaacggcagcgctacaaagtggtcctgctc
gacgagttccaggacacgtcccacgcccaactggtcctgttctcccggctcttcggcggc
gggcacgcggtgaccgccgttggcgaccccaaccagtcgatctacggtttccgcggtgcg
tcggcaggccagttgttccatttcgtgcgcgagttccccgtgtggaaagggaggccagga
catgggacagagccaaccggggcggagggcaccccggcagggggaatggcggaaggcggg
gccgactgggctcccgcgccgacgtcgtacctgacaacggcgtggcggaacggacggtcc
atcctggccgctgccaacgtgatgtctgaatccctggcccggtcagcggcgcagcgcgga
ccggcgggcgggggagggccggccgcgcccaaggtgccgccgctgcagccgagcccgtat
gcggcagcgggatctgtggtgctggggcggttcggaagcgatgtggatgaagcctcagcg
ctcgccgatgacgtcctgaagtaccgggtgacggatttcgagctgaagcccgacggttcg
ccggttccgcccgccatcgccgtcctttgccggcggcgcgcacaaatggagcccatccgg
cggcagttggaggcccgaggcattccctacgagatagtcggactgggcgggctccttgat
acccccgaaatcgtggatcttgttgccaccctgcgtgtcctcgccgaccccggccgttcc
gatgcgctgatgcgcctgctggcaggggcgcgttggcggatcggccccgcagatctgatg
gccttgcgggactggtccagccagcttgcccggcgtcgggcccaggctggacggggcgat
gaccagcttccggatgacggcccggccgtcctcgaaggcgaccttaccgacggtgccagc
ctggtggaggcattggattggctgccccgggaaggatggacctcatcgaacggcaggtcc
ctaacccccgctgcgcgggagcggatggtccggttctccacggagctgcgtcagctccgg
ggctaccttggggatgacctcaccaccctgctcggggaggtggaaagggccatgctcctt
gatatcgaggttgccgccaggcccggcatcagcatccaccaggcgcgccggaacctcgat
gccttccaggatgccgctgccgggttcctgcggacgtcccaacgcgtggacatcctcgcc
ttcctgtcctggctggaggctgcgtcagcagaagaaaacggactggaagcaccaccgggc
gacgtcaaccgggaggccgtgcagctgcttacggtccatgcttccaaggggctggaatgg
gatgtcgtttttgttccgggactgaacgccaaggacttccccagcgaccgcgactcacgc
tggagcagcgggtccgcagccttgccctggccgctgcgcggtgaccgggcagaccttccc
cagtgggacctcgaccagcctgaccaaaaaggctggctggatgcggaaaaggacttcaag
gcagctgtccaggcccacgcggaatcggaggagcgccgcctggcctacgtggcgtacacc
cgggccaagcatgtcctgtgggcgtccagcgccgcctgggtggggtccaggtcgggacgg
gcggaaatgtcgcccttcctggcagagcttgaaactctggccgccgcggcaagcgagggc
acggcgccggccgtcatccatccgcgctcagtggaggagtcctcactgcctgagaccagt
ccgctgacgctcgatactgaggtggccggctggccgtacgatcccctggaggggccggtg
gacccccgcacgggggagcgcctgcgcttggcaggcggccggaggcgcgctatggaaacc
gcggctgcccgggtggccgcggcgctggaggacgctccccgcgcgcggacagccacccgg
gagcccgaacttacaggggttgccgctgggtgggcccgggaagcagcgttgttgctcgaa
cgccgggcgaggaggtcttcagccaacgacgtccaccttcccgcccacatttcggcatcc
acgctcgttgaccttggcgaggacccgtcagccgtggcctggcggctgcgcaggcccgtg
ccccgggaaccgggcatgtcggcccggaagggcacggctttccacgcgtgggtggaagag
tactttggcacggccggcatgctggacctcggtgaagcgccgggctcggatgatcacatc
gacgcggcgtacgacctcgacgccatggtggccaccttccggtcgtccccctgggcccac
cgctctccggccttcattgaggttccggtggagacacgaataggggacgtggtggtccgt
ggacgtgttgacgcagtgttccaggatcctgacgggcgctgggacctggtggactggaag
accggccggcggccctccggggacctgcttcgggccaaggccgtccagctggcggtgtac
cggctggcatggtcgcggctgaagggcgtgccgctggaggacgtgcgcgcagcgttcttc
tacgttgccgataacgaggtggtgcggccccacgacctgggtacagcaggccagttggag
gggatcgtggcggcagccctagcttcccctagtccttcttga
DBGET
integrated database retrieval system
