Pseudarthrobacter oxydans: SMD14_14565
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Entry
SMD14_14565 CDS
T09608
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pok
Pseudarthrobacter oxydans
Pathway
pok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMD14_14565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pok03021
]
SMD14_14565
03400 DNA repair and recombination proteins [BR:
pok03400
]
SMD14_14565
Enzymes [BR:
pok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMD14_14565
Transcription machinery [BR:
pok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMD14_14565
DNA repair and recombination proteins [BR:
pok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMD14_14565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
WPU08370
LinkDB
All DBs
Position
complement(3196860..3200759)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAARHEELPNLQVEHDIEKKQLIDNRDSDIAAIARDLEGE
IARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLESFDMQAESDLLRDIIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRKGSAGEGR
IFGSVAEAIMAFDARELHLNSQVKIRLEGFVPYAGWEAPEGWEPGQPALVQTSLGQVLFN
ETLPEDYPWVEAVADKGELSRIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPAILAGYEERAAKIQGQYDKGLIDDDERRQELIEIWNKATNEIAQAMRDSLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLVTPIAVADSNGELVLDE
NVENSAYARTLAVDVVDSEGKVLAAAGTDCGDVVIDELFKAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGTEEIAYPVLRRSRLLIED
GDHVTVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEDANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDTLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgcggctggtcttacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccctcccgggactgggaatgc
tactgcggtaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcggtgtggcgtt
gaagtcacccgcgcaaaggtccgccgcgaacgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgttccctcacgcctgggctacctccttgacctg
gcgccgaaggacctcgaaaaggtcatctacttcgctgcctacatgatcaccagcgttgat
gaagccgcccgccacgaggaactgcccaacctgcaggttgagcacgacatcgagaagaag
cagctcatcgacaaccgcgactccgacatcgcggcgatcgcccgcgacctcgaaggcgaa
atcgcccgcctcgaaggcgaaggcgcgaaggctgccgacaagaagaaggcccgcgactcc
gccgaccgccagatggccaacgtgcgcaagcgtgccgacgccgacatcgagcgcctcgag
caggtctgggaccgcttcaagaacctgaaggtcgctgaccttgagggtgacgaaggcctg
taccgcgagctgcgcgaccgctacggcatgtacttcgaaggctccatgggtgccgaagcc
atcaagaagcgtcttgagagcttcgacatgcaggctgaatctgacctgctgcgcgacatc
atcgccaacggcaagggccagcgcaagacccgcgccctgaagcgcctgaaggtggtcaac
gcgttcctgaccaccaacaacagcccgcttggcatggtcctcgacgccgttccggtgatc
ccgccggaactgcgccccatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctg
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctcctgggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcccagaacatcaagtcggccaagcgaatggttgagcgttaccgc
ccgcaggtctgggacgtgctggaagagatcatcaccgaacacccggtgctgctcaaccgt
gcacctaccctgcaccgcctcggcatccaggccttcgaaccgcagcttgttgaaggcaag
gcaatccagctccacccgctggtttgtggcgccttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgagccccgaagcccaggctgaagcccgcatcctgatgctg
tcctccaacaacatcctgaagccctctgacggacgcccggtcaccctgccgtcgcaggat
atgatcatcggcctctaccacctgaccaccaagcggaagggttcggccggtgaaggccgc
atcttcggctcggtcgcagaggccatcatggcgttcgacgcccgcgagctgcaccttaac
tcgcaggtcaagatccgcctcgaaggcttcgtgccgtacgcaggctgggaagctccggag
ggctgggagccgggtcagccggcactcgtccagacctccctgggccaggttctcttcaac
gagacgctgcccgaggactacccgtgggtcgaggctgttgccgacaagggcgaactgtcc
cgcatcgtcaacgacctcgccgagcgctacccgaaggtcgtcaccgcggcaacgctggac
aacctcaaggatgccggtttctactgggccacccgctcgggcgttaccgtcgccatctcg
gacatcgaggttccggccgcaaagcctgcgatcctcgccggttacgaggaacgcgccgcc
aagatccagggccagtacgacaagggcctgattgacgacgacgagcgtcgccaggaactg
atcgaaatctggaacaaggcaaccaacgagatcgcccaggcaatgcgcgacagcctgtca
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaggtc
cgccagatcgcgggtatccgtggcctggtggccaaccctaagggtgaaatcatcccgcgc
cccatcaagtcctcctaccgcgagggcctgtcggtgctggagtacttcatcgccacgcac
ggtgcccgtaagggcctggctgacaccgctctgcgtaccgcaaactcgggttacctgacc
cgtcgccttgtggacgtgtcccaggacgtcatcgtccgcgaagaagactgcggcaccgag
cgtggcctggtcacgcccatcgccgtcgccgattccaacggcgagctggtcctggacgag
aacgtcgagaacagtgcctacgcacgtaccctcgccgtcgacgtcgtggattccgagggc
aaggtccttgcggcggccggcaccgactgcggcgacgtggtcatcgacgagctgttcaag
gcaggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgtcggaacc
tgtgccctgtgctacggccgttcactggcaaccggcaagaccgtggacatcggcgaggcc
gtgggcatcatcgccgcacagtccatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgcagtctccgccagcggcggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgtactccgaagggtgttgcaccgattgccgaagca
gccggccgcatcaccatcgaagagtccgagcgccagatgcgcctggtcatcacccccgat
gacggaaccgaagagatcgcctacccggtcctgcgccgttcacgcctgctgatcgaggat
ggcgaccacgtcaccgtcggccagaagctaatcaacggaccggtggatcccaagcaggtc
ctgcgcatcatgggtccgcgtgcggcacagaagttcctggtggacgaggtccagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtccggcgagtcggacctgctgcccggcgagctcgcc
gagcgcagccgcttcgaagatgccaaccgccgcgttgtgtccgagggcaagactccggca
tccggacgtcctgagctcatgggcatcaccaaggcgtcgctggccaccgagtcctggctg
tccgcagcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggaaag
agcgatccgctgctgggcctcaaggagaacgtcatcatcggtaagctgatcccggccggc
acgggcctcccgcgctacaccgaggtcaccgtggagcccactgaggaagcaaaggccaac
ctgttcaccggccccagcgccttcagtgacttctcgtacgacaccctgggcggggatgga
gctcccgagttccacgccatcccgctggatgactacgacctgggcaacgacttccgctaa
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integrated database retrieval system
