Pseudarthrobacter oxydans: SMD14_14840
Help
Entry
SMD14_14840 CDS
T09608
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pok
Pseudarthrobacter oxydans
Pathway
pok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMD14_14840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pok03019
]
SMD14_14840
03009 Ribosome biogenesis [BR:
pok03009
]
SMD14_14840
Enzymes [BR:
pok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMD14_14840
Messenger RNA biogenesis [BR:
pok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMD14_14840
Ribosome biogenesis [BR:
pok03009
]
Prokaryotic type
rRNA helicases
SMD14_14840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WPU08420
LinkDB
All DBs
Position
complement(3252056..3254200)
Genome browser
AA seq
714 aa
AA seq
DB search
MPENHNDAAADAATASIEFTEPAAPAAEAATVPAEAPAEAPAAPAARADEAPAPKAEDAP
AAKAEEDEEEGVKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGT
GKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLP
VYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAE
DVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVM
GPHKLDAMTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTV
DALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILF
MTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAPFRDLIA
SYEEEHNVPASEIAAALAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRTLTEG
NATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRAL
SRTRIGGELIHLELDNGRKPAGDRGSYQGNRGGDRGGNFKGNGGFKKEFRKNDGERSSAD
RGGRSYSERSFSADSGANRGQASDSRFGGHGDGSRKPRHGNEGGQRDFNRKGKW
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatcacaacgacgccgccgctgacgcagcaacagccagcatcgaattcacc
gagcccgctgctcccgcagctgaggccgcaacggttcccgccgaagcccctgctgaagcg
ccggccgctcccgccgcccgggctgacgaagctcccgcccccaaagctgaagatgctccc
gctgccaaggctgaggaagacgaagaagaaggcgtcaagttcgccgacctcggcatcgac
ggccgcgtcctcgccgccctccaggacgtcggctacgagaagccgtcccccatccaggca
gcaaccatcccgctgctgctcgaaggccgcgacgtcgtgggcctcgcccagaccggcacc
ggtaagactgcagcattcgcagtaccggcactgtcccgcctggccgagctccacgacctc
aacggcccgtcccggaagacccaggcactggtcctggctcccacccgcgaactggcgctc
caggttgccgaggccttcacctcgtacgccaagcacattgacgatttcaccgtcctcccc
gtctacggcggttccgcctacggcccgcagctcgccggcctgcgccgcggcgcccaggtt
gttgtcggtacccccggccgcgtgatcgaccacatctccaagggttccctggacctgtcc
gaactccagtacctggtgctggacgaggccgacgaaatgctgcgcatgggcttcgccgaa
gacgtggagcagatcttccagcagaccccgtcggaccgccaggtggcactgttctccgcc
accatgccgagccagatccgccgcatgtccaagcagtacctgaacaaccctgccgagatc
tccgtcaagtccaagaccaccaccggcgccaacacccgccagcggtacctgcaggtcatg
ggcccgcacaagcttgatgccatgacccgcatcctcgaggttgaagagttcgacggcgtc
atcgccttcgtgcgcaccaagatggctaccgaggacctggctgacaagctgaagtcccgc
ggtttccaggccgccgcgatcaacggtgacatcccgcagcagcagcgcgagcgcaccgtt
gacgccctgaaggaaggccgcatcgacatcctcgtggccaccgacgtcgccgcccgtggc
cttgacgtggagcgcatcagccacgtcatcaactacgacatcccgcacgacaccgagtcc
tacgtgcaccgcatcggccgcaccggccgcgcaggccgttccggcgatgccatcctgttc
atgacgccgcgggagaagtacctgctgcgttccatcgagaaggccacgcgccagccggtg
gagcagatgcacctgcccaccgcggagaccgtgaacaccctccgcctgggcaagtttgcc
gagcggatcacggagaccctcgcctccgaggacgtggccccgttccgcgacctcatcgct
tcctacgaggaagagcacaatgttccggcgtcggagatcgctgcagcccttgccgtgatg
gcccagggcggacagccgctgctggtgaaggaactgcccgcagcgccggagttccagaag
cgcgagcggtccaaggacggcttcggctcccgcggaccgacccgcacgctcaccgagggc
aatgccacctaccggatcgccgtgggacgccgccagcgcgtcatgcccggttccatcgtg
ggcgccattgccaacgagggcggcatctcctcggcacagatcggcggcatcgacatccgc
tcggaccactccctggtggaactcccggcggacctgagccccgagcagctgcgtgcgctg
tcccgcacccggatcggcggcgagctgatccacctcgaattggacaacggccgcaagcct
gccggcgaccgcggctcctaccaaggcaaccgcggcggtgaccggggaggcaacttcaag
ggcaacggcggcttcaagaaggaattccgcaagaacgacggcgagcgatcctccgctgac
cgcggcggccgctcctacagcgagcgttccttcagcgctgacagcggtgccaaccgcggc
caggccagcgactcccgcttcggcggccacggtgacggatcccgcaagccccgccacggc
aacgagggcggccagcgcgacttcaaccgcaagggcaagtggtaa
DBGET
integrated database retrieval system
