Pseudarthrobacter oxydans: SMD14_15090
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Entry
SMD14_15090 CDS
T09608
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pok
Pseudarthrobacter oxydans
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pok03032
]
SMD14_15090
03400 DNA repair and recombination proteins [BR:
pok03400
]
SMD14_15090
Enzymes [BR:
pok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SMD14_15090
DNA replication proteins [BR:
pok03032
]
Prokaryotic type
DNA Topoisomerases
SMD14_15090
DNA repair and recombination proteins [BR:
pok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SMD14_15090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WPU08467
LinkDB
All DBs
Position
complement(3304212..3305210)
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AA seq
332 aa
AA seq
DB search
MRLRRSNASGRGYRRVAAGKGFSYRDLDGSTLPPGPVRDRLESIGIPPAWTDVWIAPFEN
GHIQATGVDAVGRRQYIYHPEWRERKDRVKFDRSLQLAESLPSARRRVTMDLRSEGFSRD
RVLAGAFRMLDSGSLRVGSERYTNENGSHGLATLLCAHVTVRKDRILLKFPAKSGKDWES
EFRDADLAVLLRLLKRRGPNARLLAYKEGRQWKPVTSADINAYVKERTGSDFTAKDFRTL
RGSVAAAGSLARTGARRTAAKRKRAIARAMMEASEVLGNTPSIARKSYVDPRIVDHYHEG
ETIDPKRPDSAEAELRALLYREGDVVPLAKSG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgaggctccggcgcagcaacgcttcgggccgaggctaccgccgtgttgctgccggtaaa
ggcttcagctaccgggacctggacggctccaccttgccgcccggtccggttcgggaccgg
ctggaaagtatcggcattccgccggcgtggacagatgtatggattgccccgttcgagaac
gggcacatccaggcaaccggtgtggatgcggtgggccggcgccagtacatctaccacccg
gaatggcgggaacggaaggaccgggtgaaattcgaccgttccctgcaactggcggagtcg
ctgccgtcggcccgccgcagggtcaccatggacctgcgcagtgagggcttttcgcgtgac
cgggtcctcgccggggccttccggatgctggacagcggatcgctgcgggtggggtctgag
cggtacacgaacgagaacggcagccacgggctcgccaccctgctctgcgcccacgtgacg
gtgcgcaaggaccgtatcctgctgaagtttcccgccaagagcggcaaggactgggagtcg
gaattccgcgacgcagacctcgccgtcctgctgcggctgctcaagcggcgcggccccaat
gcccggctcctggcgtacaaggagggacggcagtggaagccggtcaccagtgccgacatc
aacgcctacgtgaaggagcggaccggatccgacttcacggccaaggacttccggaccctg
cggggctcggttgcggctgcgggcagcctggcccgcacaggcgcccggcggacggcggcc
aaacgcaagagggccatcgcccgggccatgatggaagcgtccgaggtgctgggcaacacg
ccgtcgatcgcccgcaagagctacgtcgatccccgcatagtggatcactaccacgagggc
gaaaccatcgatcccaaacggcccgactccgccgaagccgagctcagggccctgctgtac
cgcgaaggtgacgtggttccgctggcgaagagcggctga
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