Pseudarthrobacter oxydans: SMD14_18105
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Entry
SMD14_18105 CDS
T09608
Name
(GenBank) rhamnogalacturonan lyase
KO
K18198
rhamnogalacturonan exolyase [EC:
4.2.2.24
]
Organism
pok
Pseudarthrobacter oxydans
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
SMD14_18105
Enzymes [BR:
pok01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.24 rhamnogalacturonan exolyase
SMD14_18105
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Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP_3
FG-GAP
Motif
Other DBs
NCBI-ProteinID:
WPU09032
LinkDB
All DBs
Position
complement(3977776..3979773)
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AA seq
665 aa
AA seq
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MAYPSKRSPSTRAGRAWKAAPKAAAASLTAAALALTGVPLAQANPNTAPGQSGKTELKRQ
VENLNRAPVAVLTDQGVTLGWRMLGLDQDRVGFHVIRDGVQLTDEPIRNTTTYVDPAGTA
ASRYVIMTVGNGSGQDKLSAEVMPLAENYLAIKLDKPADGVSKDGKPYTYSANDSSVADL
DGDGTYEIIQLWNPSNAQDNSKSGFTGNVYVDAYKMDGTRMWRIDLGRNIRAGAHYTQML
AYDFDGDGKGEVAFKTADGTTDAAGTVIGDPAADHRNSAGYVLSGPEFLTVFNGATGTIM
DTVAYDPPRGSVSAWGDGYGNRVDRFLAGVAYLDGEKPSLMFSRGYYTRTVLVTYDLVDG
KLVKRWTFDSDIAGAQYRGQGNHNLSVADVDQDGKDEFVFGSMTIDDDGTPLYNTRLGHG
DAIHTGDLDPSRPGLETFAVHESMSASGNRGATFRDAGTGEVLWSIPAVKDTGRGATGDI
DPRFRGSESWAVGGDASWNSPRGQLMSAKGELIAEKIPAANFMAWWDGDLLREIVDHDFD
ATAGVGVPTISKWNWEAGSSDRLLTATGARTNNHTKGNPSLQADLLGDWREELAFPSSDS
TELRIYTTTSPTGVRLRTLMHDPMYRTGVARETVGYNQPPHPSFFIGEGMEAPAAPAVMY
AGTEK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
ttggcttatccctcgaaacgttccccttcaacccgtgcgggccgcgcctggaaagcggcc
cccaaagccgcggcggcatcgctcacggccgccgccctggcgctcaccggcgtgccgctg
gcgcaggccaaccccaataccgcgcccggtcagtccggaaagactgaactgaagcgccag
gtggagaacctgaaccgggcgcccgtcgccgtgctcacggaccagggcgtcacgctgggc
tggcgcatgcttggcctggaccaggacagagtgggcttccatgtgatccgcgacggcgtc
cagctcaccgatgagcccatccgcaacaccaccacctatgttgatccggccggcacggcg
gcttccaggtacgtcatcatgacggtgggcaacggcagcgggcaggacaagctcagcgcc
gaagtcatgccgctggccgaaaactacctggccatcaagctggacaagcccgccgacggc
gtcagcaaggacggcaagccgtacacctactcggccaacgattcgagcgttgcggacctg
gacggcgacggcacttacgaaatcatccagctctggaacccgtccaacgcccaggacaac
tccaagtccggcttcaccgggaatgtgtacgtggacgcctacaagatggacggcaccagg
atgtggcgcatcgacctgggccgcaacatccgcgccggcgcccactacacccagatgctg
gcctacgacttcgacggcgacggcaaaggcgaagtggccttcaagactgcggacggcacc
acggacgcggccggaaccgtgatcggggaccccgcagcggaccaccggaacagcgccggc
tatgtcctgtccgggccggaattcctcaccgtgttcaacggcgccaccggcaccatcatg
gacaccgttgcctacgatccgccgcgcggcagcgtctccgcctggggcgacggctacggc
aaccgcgtggaccgcttcctggccggcgtcgcctacctcgacggcgaaaagccgtccctg
atgttcagccgcggctactacacgcgcacggtcctggtcacctacgacctcgtggacggc
aagctggtcaagcgctggaccttcgactcggacattgccggagcccagtacaggggccag
ggcaaccacaacctctccgtggctgacgtggaccaggacggcaaggacgaattcgtcttc
ggctccatgaccattgacgacgacggcacgcccctctacaacaccaggctgggccatggc
gacgccatccacacgggggaccttgacccctcgcggccgggactggaaaccttcgccgtg
cacgagagcatgtcagccagcggcaaccgcggcgccaccttccgcgacgcgggcaccggt
gaagtgctctggagcattcccgccgtcaaggacaccggccgcggcgccaccggcgacatc
gacccccggttccgcggctcggaaagctgggccgttggcggcgatgcgtcctggaactcg
ccgcgcggccagctcatgtcagcgaagggcgaactgatcgccgagaagatcccggcagcc
aacttcatggcctggtgggacggggacctcctccgcgagatcgtggaccacgactttgac
gccaccgccggcgtgggcgtgcccaccatttcgaagtggaactgggaggccgggtccagc
gacaggctgctcacggccaccggcgcccggaccaacaaccacacgaagggcaacccgtcg
ctccaggcggacctcctgggtgactggcgcgaggaactggccttcccgtcgtcggacagc
actgagctgcggatctacaccaccacctcgcccaccggggtccggctccgcaccctgatg
cacgatccgatgtaccggaccggggtggcccgcgagacggtcggctacaaccagccgccg
cacccgagcttcttcatcggcgagggcatggaggctccggcagcgcccgccgtgatgtac
gcgggcacggagaagtag
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