Polaromonas sp. JS666: Bpro_1473
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Entry
Bpro_1473 CDS
T00343
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pol
Polaromonas sp. JS666
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pol03016
]
Bpro_1473
Enzymes [BR:
pol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Bpro_1473
Transfer RNA biogenesis [BR:
pol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Bpro_1473
Prokaryotic type
tRNA splicing ligases
Bpro_1473
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4402
Motif
Other DBs
NCBI-ProteinID:
ABE43421
LinkDB
All DBs
Position
1524867..1526099
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AA seq
410 aa
AA seq
DB search
MNYQQHDVQGGVPVKMWTNGVPVEAQALRQLENSARLPIVFRHVAVMPDVHYGLGATIGS
VIPTFKAIIPAAVGVDIGCGMMACKTTLRAEDLPDNLGPLRSEIEKAVPHGSAPKTYRRN
GSTREVGAWTNPPGAADAAWGQLVDEFEALCLDYPRLKNTNNHRHMGTLGGGNHFVEVCL
DESGGVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYLEEGSQYFGDYVR
GVGWAQKFARLNREVMMQAAIGALRKVISKPFETHLEAVNCHHNYVQKETHFGQEVFVTR
KGAVSAKAGELGIIPGSMGAKSFIVRGKGNPDSFMSCSHGAGRTMSRTQARKLFTVDDQI
KATEGVECRKDVEVIDEIPMAYKDIDAVMLAQSDLVEVVYTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaactaccaacaacatgacgtccaaggcggcgtgcccgtgaagatgtggaccaatggc
gtgccggtcgaggctcaggcgctcaggcagcttgagaactcggcgcgcctgcccatcgtg
ttcaggcacgtggccgtgatgcccgatgtgcactacggcctgggtgcgaccattggcagc
gtgatcccgaccttcaaggccatcattccggcggcggtcggcgtggacatcggctgcggc
atgatggcctgtaagaccacgcttcgcgccgaagacctgcccgacaacctcgggccgctg
cgctcggaaatcgaaaaagccgtgccgcacggttccgcacccaagacctaccgcaggaac
ggatcgacgcgggaggtcggcgcctggaccaacccgccaggcgcggccgatgcggcctgg
ggccagctggtggatgagtttgaagcgctatgcctggactacccacgcctgaagaacacc
aacaaccaccgccacatgggaaccctgggcggcggcaaccacttcgtcgaggtgtgcctc
gacgaaagcggcggtgtgtggatcatgctgcacagcggttcgcggggggtgggcaacgcc
atcggtacgcacttcatcgaacttgccaagaaggatgccgagctgcaccagcgcaacctg
ccggacaaggacctggcttacctcgaggaaggttcgcagtacttcggcgactatgtgcgc
ggcgtgggctgggcgcagaagttcgcgcgcctgaaccgcgaggtgatgatgcaggccgcg
ataggcgcgctgcgcaaggtgatcagcaagcccttcgagacgcacctggaagcggtgaat
tgccaccacaactatgtgcagaaggaaacgcactttgggcaagaggtgtttgtgacccgc
aaaggagctgtgagtgccaaggcgggagagcttgggatcattcccgggagcatgggcgcc
aagagtttcatcgtgcgcggcaagggcaatccggacagcttcatgagctgcagccacggg
gccggcaggaccatgagccgcacccaggccagaaagctgttcacggtggacgaccagatc
aaggctacggaaggggtggaatgccgcaaggacgtcgaggtgatcgacgagatcccgatg
gcgtacaaggacatcgatgccgtgatgctcgcgcaaagcgacctagtggaagtggtctac
acgctcaagcaggtagtgtgtgtgaagggctag
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