Polaromonas sp. JS666: Bpro_2399
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Entry
Bpro_2399 CDS
T00343
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pol
Polaromonas sp. JS666
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pol03019
]
Bpro_2399
Enzymes [BR:
pol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bpro_2399
Messenger RNA biogenesis [BR:
pol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Bpro_2399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
WHD_HA2
AAA_22
NACHT
T2SSE
AAA_19
nSTAND3
SRP54
AAA_30
nSTAND_NTPase5
AAA_23
ABC_tran
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABE44319
LinkDB
All DBs
Position
2495094..2499302
Genome browser
AA seq
1402 aa
AA seq
DB search
MAALTADSFLPLSPSPSLIPLAITFPESLPVSGKRDDITAALQAHQVIIVCGETGSGKTT
QLPKIALAMGRGKLNYPAGQGKLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQ
DRLSRDASVKLMTDGILLAETQTDPLLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPRRP
DLKVIITSATIDAQRFADYFASSAPAPGRPKPGAAPEGLEPVAPSQLEQDWTGDRGDASR
EPRPARPRDDAQRGAWGPKIPAPVIMVSGRMFPVEQRYRPFEESRDYDLNDAIADGVDEL
WQNPHSAGDILVFLPGEREIREAADHLRKHLAHQPLTRNAEVLPLFARLSQAEQDRIFDG
HTGRRIVLATNVAETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLMVEPVSQAAANQRAG
RCGRVADGICIRLYDEQDFVGRSRFTDPEILRSSLAAVILRMKALHLGAVEDFAFIEPPQ
RRAIADGYQLLAELGAVDDDNELTPVGRTLAKLPLDPRVGRMILEAKDRQALDEVLVIAS
ALSVQDVRDRPMDRQAQADQAHAKFDDEKSEFSGYLKLWKWLGDSRGGRPSPQPSPKGRG
GKTELLPLPLGEGRGEGSPVHKISNRQYETLLRENYVNVRRVREWRDIHSQLHSVVGEQG
WHLNERPASYEQLHLSMLCGLLGNIGCKSDEEDWYLGARGIRFYRHPGAKLSKKPGRWIV
AAELVETTRLFGRGIANIEPQWIEQVAGHLLKKQLLDPHWEKKAAQVTALERATLYGLVV
YNGRRVNFGRVDPVSAREIFIREALVAGNWDTKLTFLAANLRLVQQVQDLEHKARRQDVL
VDEELIYAFYDQQLPADVCSGASCESWYKDEVKKQPKLLLLTREELMRHEAAGITTQAFP
KTLRLGGVDCMVTYLHEPGDPKDGVTVDVPLFALNQVNEERCEWLVPGMLKDKVQALIKT
LHQRPRSRLVPLPETAARMAGQLLQPEVFGSGSLTDAILKLVRDATSLDIKRADMKLDML
PAHLFMNFRVIDEHGRQLGAGRNLGALKGELGPQARGAFQALAGLKNLARPAASAPNEES
DRPSAQVPTGQAAIKNVAKGSTQSESHPVKVAERYTSWSFGELPELMEIRKGSQTLIGFP
ALIDLGDAVTIEVFDEPDLAAVKHRAGLRRLFSLQIKDALKYLEKNLPDLQKMATAYMLV
GRAADNSGGGTLEELRAQIIEVALDRAFLLDPLPTGEADFKRRVDDGRGRLTLIASEVAR
LAAGILTEYAVAQRKIKDTKNAAEAVADASQQLQRLMPKRFLTTTPYPQLQHFVRYLKAI
TLRLEKWRADPARDAARLAELRPQEQRYWRLVAERKGATDARMQEFRWLLEELRVSFFAQ
ELRTPQPVSVKRLDKAWQQLNG
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
ttggcagctttgactgctgactctttcttgccgctttccccgtctccctccttgatcccc
ctggccattacctttcccgagtcgctgccggtctccggcaagcgcgatgacatcaccgct
gcgcttcaggcgcaccaggtgatcatcgtttgcggcgaaaccggctcgggcaaaaccacc
cagctgcccaagatcgcactggccatgggccggggcaagctcaattacccggcgggccag
ggaaaactgatcggccacacccagccgcgccgcatcgctgcctccagcgtggccaagcgg
attgccgaagagctgaaaacaccactgggcgaggtggtgggttacaaggtgcgctttcag
gaccggctgagccgtgatgcgtcagtcaagctgatgaccgacggcatcctgctggccgag
acgcagaccgatccgctgctcagggcctacgacaccctcatcattgacgaggcgcacgag
cgcagcctgaacatcgattttttgctgggctatttgcgccagctgctgccgcgccggccc
gacctgaaggtgatcatcacctcggccaccattgatgcgcagcgttttgctgactatttc
gcgtcaagcgcgccggcgccgggccgccccaagccgggcgcagcccctgaggggctggag
cctgtggctccaagccagcttgagcaggattggacaggcgacagaggcgacgcgtctcgc
gagccgcggcctgcaaggcctcgcgacgacgcgcagcgcggagcgtgggggccaaagatt
cccgcgcccgtcatcatggtgtccggccggatgtttccggtcgagcagcgctaccggccc
tttgaggagtcgcgtgactatgacttgaacgacgcgatcgccgacggcgttgatgaactc
tggcaaaacccgcacagcgcgggcgacatcctggtgtttctgccgggcgagcgcgagatc
cgcgaagctgccgaccatttgcgcaagcatcttgcccaccagccactgacccgcaacgcc
gaagtgctgccgctgtttgcgcgcctgagccaggccgagcaggaccggatttttgacgga
cacaccggccggcgcattgtgctggccaccaacgttgcggagacctcgctcacggttccg
ggtatccggtacgtcattgacgcaggcacggcgcgcgtcaagcgctacagtttcaggagc
aaggtggagcaactcatggtggagccggtgtcgcaggcggcggccaaccagcgcgccggg
cgttgcggccgggtggcggacggcatttgcatacgtctctacgatgagcaggattttgtg
ggccggtcccgctttaccgaccctgaaatcctgcgcagttcactggcggcggtgattttg
cgcatgaaggcgctgcacctgggcgcggtggaagactttgccttcatcgagccgccgcag
cgacgcgccatagccgacggttaccagttgctggccgaactgggtgccgtggacgatgac
aacgaactgacgccggtgggccgcacgctggccaagctgccgctggatccgcgcgtgggc
cgcatgatcctggaggcgaaggaccggcaggcgctggacgaagtgctggtaattgccagt
gccctgagcgtgcaggatgtgcgcgaccggcccatggacaggcaggcacaggccgaccag
gcgcacgccaagtttgacgacgagaaaagcgaattcagcggttatttgaagctctggaaa
tggctgggtgattcgcggggaggcaggccctcaccccaaccctctcccaaagggcgaggg
ggtaaaaccgaattactccctctccccctgggagagggcaggggtgagggctccccggtc
cacaaaatttccaaccgccagtacgaaaccctgctccgcgaaaactacgtcaacgtccgc
cgcgtgcgcgagtggcgcgacattcattcgcaactgcacagcgtggtgggtgaacagggc
tggcacctgaatgagcggcccgccagttacgagcagctgcatttgtccatgctctgcggc
ctgctgggcaacattgggtgcaagagcgacgaggaagactggtacctgggcgcgcgcggc
atccggttttatcggcaccccggcgccaagctcagtaaaaaaccgggccgctggattgtg
gcggccgaactggtggaaaccacgcggctgtttggccgcggcatcgccaacatcgagccg
cagtggatagagcaggtggccggccatctcttgaagaagcagctgctggacccgcactgg
gaaaagaaggctgcacaggtgaccgcgctggagcgtgcgacgctttacggactggtggtt
tacaacggccggcgggtcaattttggccgcgttgacccggtgtcggcgcgtgaaattttc
atccgcgaagcgctggtcgcgggcaactgggacacaaagttgaccttcctggcggccaac
ctcaggctggtccagcaagtgcaggacctggagcacaaggcgcgccggcaggacgtgctg
gtggacgaagagctgatttacgctttttatgaccagcagctgcctgccgacgtgtgcagc
ggcgcgagctgcgagagctggtacaaggacgaggtcaaaaagcaacccaaactgttgctg
ctcacgcgagaggagttgatgcgccacgaagcggcaggcatcacgacacaggcctttccc
aaaaccctgcgtctgggcggtgtggactgcatggtcacttatctgcatgagccgggtgac
cccaaagacggcgtgacggtagacgtaccgctgtttgcgctcaaccaggtcaatgaagag
cgctgcgagtggctggttcccggcatgctcaaggacaaggtgcaggcgctcatcaagacc
ctgcaccagcgcccgcgctcacgtctggtgccgctgcccgagaccgctgcgcgcatggcg
gggcagctgctgcagcccgaagtgtttggcagtggatcgctcacggatgcgatcctgaag
ctggtgcgcgacgcgacctcgctcgacatcaagcgcgcagacatgaagctggacatgctg
cccgcccatcttttcatgaacttccgggtcattgacgagcatggccggcaactgggcgca
ggccgcaacctgggcgcgctcaaaggtgagttgggcccgcaggcgcgcggcgcgtttcag
gcgctggccgggctcaagaatctggccaggcctgctgcttcagcgcccaatgaagaatca
gatcgaccttcagctcaagtgcctactgggcaagcggctatcaaaaatgtagccaaagga
agtacccaatccgagagccatcccgtcaaagtggcggagcgctacaccagctggagcttt
ggcgagctgccggaacttatggaaatccgcaagggaagccagacattgatcggttttccg
gccctcatcgaccttggggatgccgtgaccatcgaggtgtttgacgaacccgacctggcc
gcggtcaaacaccgcgccggcttgcggcgcctgttctcgctgcagatcaaggacgcactc
aagtacctcgaaaagaacctgcccgatttgcagaaaatggccacggcctacatgctggtc
gggcgtgccgccgacaactccggcggcggaacgctggaggagctgcgtgcgcaaatcatc
gaggtggcgctggaccgggcgtttttgctcgatcccttgccgacgggcgaggctgatttc
aagcgacgggtggacgacgggcgagggcgcctgaccttgatcgccagcgaagtggcacgg
ctggcggccggcattctgaccgaatacgccgtggcccagcgcaagatcaaggacaccaaa
aatgcggcggaggctgtggccgatgccagccagcagctgcagcgcctgatgcccaaacgc
tttttgaccaccacaccctacccgcagctgcagcactttgttcgctacctgaaggcgatc
acgttgcgcctggagaaatggcgagccgacccggcacgtgacgcagcgcggctggccgag
ttgcgcccgcaggagcagcgctactggcgcctggtggccgagcgcaaaggcgctaccgat
gcacgcatgcaggagtttcgctggctgctggaggagttgcgcgtgagcttcttcgcacag
gagctgcgcacgccacaaccggtgagcgtgaaacggctggacaaggcctggcagcaactg
aatggttga
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