Polaromonas sp. JS666: Bpro_2700
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Entry
Bpro_2700 CDS
T00343
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pol
Polaromonas sp. JS666
Pathway
pol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bpro_2700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pol03019
]
Bpro_2700
03016 Transfer RNA biogenesis [BR:
pol03016
]
Bpro_2700
Enzymes [BR:
pol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bpro_2700
Messenger RNA biogenesis [BR:
pol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bpro_2700
Transfer RNA biogenesis [BR:
pol03016
]
Prokaryotic type
tRNA degradation factors
Bpro_2700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ABE44616
LinkDB
All DBs
Position
complement(2841974..2844364)
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AA seq
796 aa
AA seq
DB search
MTLHEKRFPIKTSHQNSGASSGLLAEFEGTVSGHRDGHGFVLRDDGEPDIYLPPNEMRAV
LHKDRVKARIVRHDRKNRPEGRVTEIIERSPNPIIGRLLQESGVWLVAPEDKRYGQDILI
PKGATGTAKSGQVVVVQLTEPPALFGQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFS
DEALALARTLPDAVRPADKKHRVDLTDISLVTIDGEDARDFDDAVYCEPAKVGRGKGWRL
LVAIADVSHYVETGSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPNVERLCMVC
DMLINAKGEVHAYQFYPAVMFSHARLTYTEVAAILANTRGPEAAQRKALVPHLLNLHDVY
QALLKERGVRGAVDFETTETQIVCDEAGRIEKIVPRTRNVAHRLIEEAMLAANVCSADFI
EQSKHVGLYRVHEGPTPEKKEMLRNYLKALGVGMTIGEEPTPGEFQQIAVATKDRPDAQQ
IHSMLLRSMQQAIYTPINSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAALTKSKYQLP
VLPTPGEAEAKLSKRLASRVRDPSEKPKKISADQLAWQAAGLHCSANERRADEASRDVEA
WLKCKYMREHLGEEFGGVVTAATGFGIFVTLDAMYVEGLVHITELGGEYFRFDEARQELR
GERTGIRYAIGTRVRVQVSRVDLDGRKIDFRLVHEGEALLGRAMKDKTGGHSGELPAQER
GTSSRKAGGQRAGKGAGKRSEARSGGRGTGSGTARRDAVTDRGADRTPESPIQALKAAVK
KSAGSASRKQGKKPRR
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcttcacgaaaagagatttcctatcaaaacatcgcatcaaaattccggcgcatcg
tccggactcctcgctgaattcgagggtacggtttccggccaccgcgacggccacggtttc
gttctgcgcgacgacggcgaacccgacatttacctgccgcccaacgaaatgcgcgcggtg
ctgcacaaggaccgcgtcaaggcacgcatcgtgcggcacgaccggaaaaaccggcccgaa
ggacgcgtcaccgaaatcatcgagcgctcgcccaaccccatcattggccgtctgctgcag
gaaagcggtgtctggctggtagcgcccgaagacaagcgctacggccaggatatcctgatc
cccaaaggggcgacgggcacggccaagagcggccaggtcgtggtggtgcaactgaccgaa
ccgccggcactgtttggccaaccggtggggcgggtggtggaagtgctgggtgaaattgac
gatccaggcatggagatcgagatcgccgtgcgcaaatacggcgtgccgcacgaattcagc
gacgaagcattggccctggcgcgcaccctgcccgacgcggtgcgaccggcggataaaaaa
caccgcgtggaccttacagacatttccctggtaaccattgacggagaagatgcccgcgat
tttgacgatgccgtctattgcgagcctgccaaagtgggtcgtggcaagggctggcgtctg
cttgtggcgattgcagacgtgagccattacgtggaaaccggcagcgccattgacatcgat
gcctatgaccgtgccaccagcgtgtattttccgcgccgcgtgattcccatgctgccggaa
aaactgtcgaacggcttgtgttcgctcaaccccaatgttgagcgcctgtgcatggtgtgc
gacatgctgatcaacgccaagggcgaggttcacgcctaccagttttacccggccgtgatg
ttcagccatgcccggcttacctacaccgaagtagccgccattctggccaacacgcgcggc
cccgaggcggcgcaacgcaaggcactggttccgcacttgctgaatttgcacgatgtgtac
caggctctcctgaaggagcggggcgtgcgcggcgccgtcgattttgagaccaccgagacc
cagatcgtgtgcgacgaagcagggcgtatcgagaagatcgtgccgcgcacccgcaacgtg
gcgcaccgcctgattgaagaggccatgctggcggcgaatgtgtgctcggccgatttcatc
gagcagagcaagcatgtgggtctctaccgcgtgcatgaaggcccgacccctgaaaagaag
gagatgttgcgcaactacctcaaggcgctgggcgtgggcatgacgattggcgaggagccg
acgcccggtgagttccagcagattgccgttgcgaccaaagaccggcccgatgcgcagcag
atccattccatgctgctgcgctccatgcagcaggctatttacacaccgatcaacagcggc
cattttggcctggcctatgaggcctatacccacttcaccagccccatccgtcgttacccc
gacctgctggtgcaccgcgtgatcaaggcagcgctgaccaagtccaaataccagctgccg
gtattgcccacaccgggcgaggccgaggccaagctgtccaagcggctggcctcccgtgtc
agggatccgtcggaaaagcccaaaaaaatcagtgctgaccagctggcctggcaggctgcc
ggcctgcactgcagcgccaacgagcggcgtgccgacgaggccagccgcgacgttgaagcc
tggctcaagtgcaagtacatgcgcgagcatctgggcgaggagtttggcggcgtggtgacg
gcggcaacgggttttggcatctttgtcacgctggacgccatgtatgtggaaggcctggtg
cacatcaccgagctcggcggcgagtactttcgctttgacgaggcccggcaggaactgcgc
ggtgagcgcaccggcatccgctacgcgattggcacgcgggtgcgggtgcaggtcagccgg
gtcgacctggacggccgcaagatcgatttccgcctggtgcatgagggcgaagcgttgctg
ggccgtgccatgaaggacaagaccggcggccattccggggagttgccggcgcaggagcgg
ggtacttcttcgcgcaaggccggggggcagcgtgcaggcaagggcgcaggaaaacgctcc
gaggcgcgctccggcggccgcggtacgggtagcgggaccgcaaggcgagacgccgtcacg
gaccgaggcgccgacaggacacccgaatcgccgattcaggcgctcaaggctgcggtgaaa
aaatcggccggcagtgccagtcggaagcagggaaaaaagcctcgccgctga
DBGET
integrated database retrieval system
