Polaromonas sp. JS666: Bpro_3520
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Entry
Bpro_3520 CDS
T00343
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pol
Polaromonas sp. JS666
Pathway
pol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bpro_3520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pol03019
]
Bpro_3520
Enzymes [BR:
pol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bpro_3520
Messenger RNA biogenesis [BR:
pol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bpro_3520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Gag_p24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABE45428
UniProt:
Q126W4
LinkDB
All DBs
Position
3723231..3724970
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AA seq
579 aa
AA seq
DB search
MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML
QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ
IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP
KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTH
IINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFMQ
DIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSEM
MQRIRDTKGAQPARGASGGGNGGNGGNGGGRGRGPAGGGNGSGNGSGRGPRTPNPGQPRQ
NSGYSQGGQPAQPRHAQARQRDEQPRAPRNDSRSEPRNDFDNQQPASHASSGFPSSGQPT
GNRNNFRGNRSGGGGGSGGAGGRGNGPRRPGGPGSFTGR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaattgaaattggctccggccattcttaaagccgtgcttgagcagggt
tacgacacccccacgcctatccaggcccaggcgattcccgccgtgctggccggcagcgac
ctgctcggcggcgcccagacgggcaccggcaagaccgccgcgttcaccctgcccatgctg
cagcgcctgtctaccgaaccccggctgaccaaccgacgcggcgtcaacgccgtgcgcgcc
ctcatcatgacgccgacccgcgagctggccgcgcaggttgaagaaagcgtacgcacctac
ggcaaatacctggatctcacctccatggtgatgttcggcggtgtcggcatgggggcgcaa
atcgacaagctgcgccgcggcgtggacatcctggtggccacccccggccgcctgctcgac
catgcaggccagggcacgctggacctgagccaggtacagatcctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagaaggtgctggcgctggtgccc
aagcacaagcagtcgctgctgttcagcgccaccttcagcgacgagatccgcgaactggcc
aatggcctgctgcgtgaccccctgcacattcaggtgacgccgcgcaacaccaccgtgcag
cgcatcacgcagacgatccatccggtgggccgcagcaaaaagaaggcgctgctgacccac
atcatcaacgagcacaactggagccaggtgctggtgttcacgcgcaccaagtttggcgcc
aacaacgtggccgagcacctgaccaaaaacggcattgaagccatggccctgcacggcaac
aagagccagaccgcccgcacccaggcgctgcagggcttcaaggacggcacgattcgcgca
ctggtcgccacggacatcgcagcccgcggcattgacatcgacgaattgccgcacgtggtg
aactacgagattcccaacgtcagtgaagactatgtgcaccgcatcggccgcaccggccgc
gccggcaacagcggcgaggcggtgagcctggtgtgtctggatgaagaaggctttatgcag
gacatcgagcgcttcaccaagcagaacattgaaaaagtgctggtgcccggctttgaagcc
gagcccggcgaaagagccgagccgctggccatgggccgccagaccatctggggcggcctc
ggtaaacccccaagccgtgacgtgatgcaggccgccgcgaaagcagcgcgcagcgaaatg
atgcagcgtatccgtgacaccaaaggcgcccagcctgcgcgcggcgcgagtggcggcggt
aatggtggcaatggcggcaacggaggcggccgcggacgcggccccgccggtggcggcaat
ggcagtggtaatggcagtggacgcggcccgcgcacccccaatccgggtcagccgcgccag
aattccggctattcgcaaggcggccagcctgcccagccgagacatgctcaggcgcggcaa
cgcgacgagcaaccccgtgcgccaaggaatgactcacgcagcgagcctcgcaatgacttc
gacaaccagcagcccgccagccacgcctcgtccggattcccgtcttccggccaacccact
ggcaaccgcaacaacttccggggcaaccgctccggcggtggcggcggctcgggtggcgct
ggtggccggggcaacgggcctcgtcggccaggcggtcctggctcgtttactggccgataa
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