Polaromonas sp. JS666: Bpro_3660
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Entry
Bpro_3660 CDS
T00343
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pol
Polaromonas sp. JS666
Pathway
pol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bpro_3660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pol03019
]
Bpro_3660
03009 Ribosome biogenesis [BR:
pol03009
]
Bpro_3660
Enzymes [BR:
pol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bpro_3660
Messenger RNA biogenesis [BR:
pol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bpro_3660
Ribosome biogenesis [BR:
pol03009
]
Prokaryotic type
rRNA processing factors
Bpro_3660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABE45564
LinkDB
All DBs
Position
3858352..3861477
Genome browser
AA seq
1041 aa
AA seq
DB search
MKRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAQGVPVSQARINDVIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQAR
QFMAHVMPEHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDSTASVLCQVPVDVASFLLNEKRSEIGKIELKQRINVLLVPNKTLETPN
YRLERLKHDDPRLDNIEASYKLADEVEDPTTVTRRSQEKHNKQEPVIKGVLPDAPAPIAP
PKPEPVAPAAKAAPRPAPAAPAHVAAEKGFFGWIKSLFGGTEAPAAAPAAEVKKDERSGE
ARREGRDGRGERGERSERGGRDGRRGGRSRGEGRGEGRGEARPESRPEGRGDRGEGRGGE
RRERSPEARGEGARQERPAGEARAEARPENRGEGQPRSEGRTDGRGEGRGDRSRRERGER
GDRIPRDAAEQDLALANQAAMAAAMGGDAAVQGQDRPAQEAGRDGDRQQGGREGRGEGRR
ERGERGGERGGRRNDRRGERTEGQGPAADTAGNTVSGEAAPMAAVALDETGQTLTQNQNG
QGDSPVDEQRQPRERRSRDRYGRDRRERGEERAESGERSEQAAESATAPASSEQNQAPAL
EERAPVATEFVASSVAPVAASAPAPAYTAPMAAAAPVATPVPVPVPVPAPAAASIMLPKV
QAYALPLQDLAQVAESSGLQWVNSDAAKIAEAQAAIAAEIKPVHVPRERPPLAVSDEGPL
VLVETRRDLGSMAQPFEQPSA
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctggtaaacgccacacaggctgaagaacgccgcctggcgatcgtcgat
ggacaaaaactcctcgactacgaaattgaaattgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccttcgctggaagcctgctttgttgactac
ggtgaagaccgccacggcttcctgccgttcaaggaaatctccaagcaatactttgcgcag
ggcgtgccggtcagccaggcacgcatcaacgatgtgatccgcgaaggccaggaactgctg
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcagccctgaccacgttcgtgtcg
ctcgcaggccgctatgtggtcctgatgcccaacaacccgcgcggcggtggcgtgagccgc
cgcatcgagggcgacgaccgggccgagctcaaggaagcgatggaccagctcgagtacccc
aatggcatgagcatcatcgcgcgcaccgccggcatcggccgcagcgcacccgagctgcag
tgggacctgaactatctgctcaagctctggacggccattgacggcgccggcaagggcggc
aagggcgctttcctgatttaccaggaatccagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggcgacattctgttcgacaccgacgacgtctacgagcaggcccgc
cagttcatggcccacgtgatgcccgagcatgagcaccgcgtcaagcgctaccgcgatgac
gcgccgctgttctcgcgcttccagatcgagcaccagatcgagtcggcctacgcccgcacc
gtgcagctgccatccggcggcgccatcgtgatcgaccacaccgaagcgctggtttcggtc
gacgtcaactcggcccgcgccatcaagggcggcgacatcgaagaaaccgccacgcgcacc
aacctggaagccgccgatgaagtcgcacgccagatgcgcctgcgcgacctgggtggcctg
atcgtcatcgacttcatcgacatggaagagtcgcgcaaccgccgcgatgtggaaaaccgc
ctgcgcgatgcgctgcggcaagaccgcgcacgcgtgcagttcggcaccatcagcaaattc
ggcctgatggaaatgagccgtcaacggctgcgccctgccctgtcggaaggcgcgtcgatt
ccctgcccgcgttgcggcggctccggccatatccgcgacacggaaagctcggcgctgcag
atcctgcgcgtcatccaggaagagtccctgaaagacagcacggcttcggtgctgtgccag
gtgccggtggatgtggcgtctttcctgctcaacgaaaaacgctccgaaatcggcaagatc
gagctcaagcagcgcatcaatgtgctgctggttcccaacaagacactggagacgccgaac
taccgcctggagcgcctcaagcacgacgatccgcgcctggacaatatcgaagcgagctac
aagctggctgacgaggtggaagacccgacgacggtgacccgccgcagccaggaaaagcac
aacaagcaggaacccgtgatcaagggcgtgctgcccgatgcgccggctccgattgccccg
cccaagcccgaaccggtagcccctgcggccaaagcggcaccgcgcccagcgcctgcagcg
ccagcccacgtggcagccgaaaaaggcttctttggctggatcaagagcctgttcggcggc
accgaagcgccggctgcagcgcccgccgctgaagtgaagaaagacgagcgcagcggcgag
gcacggcgcgaaggacgtgatggacgcggcgagcgcggtgaacgttcagagcgcggaggc
cgggacggccgccgtggtggccgcagccgcggtgaaggtcgtggggaaggccgcggcgaa
gcccgcccggagagccgacccgaaggtcgtggcgaccggggtgagggccgcggcggcgaa
cgccgtgaacgcagtcccgaagcacgcggcgaaggcgcacgccaggaacgtcccgccggg
gaagcacgcgctgaagcacgcccggaaaatcgcggcgaaggccagccccgcagcgaaggt
cgcaccgacggccgtggcgagggccgtggtgaccgcagccgccgcgagcgcggcgaacgc
ggcgaccgcatcccacgcgatgcggcagagcaggatctcgcattggccaaccaggccgcc
atggccgcagccatgggtggcgatgctgccgtgcagggacaggacaggcccgcccaggaa
gccggccgtgacggcgatcgccagcagggcggacgcgaaggacggggcgaaggtcgccgc
gagcgcggtgaacggggtggagagcgcggtggccgccgcaatgatcgccgcggcgaacgc
accgagggccagggcccggccgccgacaccgctggcaataccgtgagcggtgaagccgcg
cctatggctgcagttgcactcgacgagacaggccagaccctgacgcaaaaccagaacggc
cagggcgatagcccggtcgacgagcagcgccagccccgcgaacgccgcagccgtgaccgc
tacggccgcgaccggcgcgagcgtggcgaggagcgtgctgaaagcggcgagcgcagcgaa
caggccgccgagagcgccaccgcacccgccagttcagagcaaaatcaggcccctgccctg
gaagagcgtgcaccagttgctactgaatttgtagcatcttctgtggctccagtggctgct
tcggctccggctcctgcctacacggcgcccatggccgcggccgcacccgtggcaacgccc
gtgcctgtgcctgtgcctgtgcctgcacccgcagcagccagcatcatgctgcccaaggtc
caggcctacgccctgcccctgcaggacctggcgcaggtggccgagtcttcaggcctgcaa
tgggtcaactccgacgcggccaagattgccgaagcgcaagccgccatcgccgctgaaatc
aaaccggtgcatgtgccgcgcgagcgcccgccgctggcggtgtctgatgaaggtccgctg
gtgctggtggagacccgccgcgatctgggctcaatggcgcagccctttgagcaaccatcc
gcctga
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